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HG10014274 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014274
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr02:9076342..9077901
RNA-Seq ExpressionHG10014274
SyntenyHG10014274
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5469007.1 hypothetical protein F2P56_013112 [Juglans regia]5.6e-1742.86Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFL--NQDTGSFQYG
        + K +G  +GEFLEVD  + +  WGE  R++VL+DIS PL+R   +  G D    W+ + YERLPDFCY CG +GH ++E     EF+  N +     YG
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFL--NQDTGSFQYG

Query:  SWLKFNGSNPRR
        +WL+   S+P+R
Subjt:  SWLKFNGSNPRR

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.5e-1741.38Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW
        MA RLG+ +G F +V+ + ++ CWG   R++V  D+ KPL RGI ++     G  WI I+YERLPDF Y+CGR+ H++K+   +   ++  + + QYG W
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW

Query:  LKFNGSNPRRRRKNSS
        L+F G       KNSS
Subjt:  LKFNGSNPRRRRKNSS

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.4e-2042.11Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDT-GSFQYGS
        MA RLG+ +G F++VDC++    WG + RI+VL+DI+KPLRRGI ++     G  WI I+YERLPDFCY CG IGH   + +        D+  + +YG 
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDT-GSFQYGS

Query:  WLKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNS
        WL+F GS    ++     +  +++S  +SS NS
Subjt:  WLKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.9e-1842.22Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW
        MA RLG+ LG F E DCD  +  WG N R++V++DISKPLRRGI ++     G  WI I+YERLPDFCY+CG               L+      QYGSW
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW

Query:  LKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNSFSS
        L++ G+    +     + + +++  D S +NSFSS
Subjt:  LKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNSFSS

XP_035546641.1 uncharacterized protein LOC108984200 [Juglans regia]5.6e-1742.86Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFL--NQDTGSFQYG
        + K +G  +GEFLEVD  + +  WGE  R++VL+DIS PL+R   +  G D    W+ + YERLPDFCY CG +GH ++E     EF+  N +     YG
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFL--NQDTGSFQYG

Query:  SWLKFNGSNPRR
        +WL+   S+P+R
Subjt:  SWLKFNGSNPRR

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054817.1e-1841.38Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW
        MA RLG+ +G F +V+ + ++ CWG   R++V  D+ KPL RGI ++     G  WI I+YERLPDF Y+CGR+ H++K+   +   ++  + + QYG W
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW

Query:  LKFNGSNPRRRRKNSS
        L+F G       KNSS
Subjt:  LKFNGSNPRRRRKNSS

A0A6J1DU55 uncharacterized protein LOC1110231356.8e-2142.11Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDT-GSFQYGS
        MA RLG+ +G F++VDC++    WG + RI+VL+DI+KPLRRGI ++     G  WI I+YERLPDFCY CG IGH   + +        D+  + +YG 
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDT-GSFQYGS

Query:  WLKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNS
        WL+F GS    ++     +  +++S  +SS NS
Subjt:  WLKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNS

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-1842.22Show/hide
Query:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW
        MA RLG+ LG F E DCD  +  WG N R++V++DISKPLRRGI ++     G  WI I+YERLPDFCY+CG               L+      QYGSW
Subjt:  MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSW

Query:  LKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNSFSS
        L++ G+    +     + + +++  D S +NSFSS
Subjt:  LKFNGSNPRRRRKNSSVNEGKDNSSDNSSDNSFSS

A0A803KPE0 Uncharacterized protein4.9e-1948.15Show/hide
Query:  LGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTG-SFQYGSWLKF
        +G+ LG F+++D D D L WGE  RIKVL+DI+KP R G+++ SG ++ S WID+KYERL DFC+ CGR+ H  KE  +  +    DT  ++QYG WL+ 
Subjt:  LGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTG-SFQYGSWLKF

Query:  NGSNPRRR
          ++PR+R
Subjt:  NGSNPRRR

A0A803L340 Uncharacterized protein1.2e-1744.26Show/hide
Query:  LGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLN-QDTGSFQYGSWLKF
        +G+ LG FLE D D D L W E  R+K+ +DI KPLRRG+ + +G    S WID+KYERL DFC+ CGR+ H  ++ NF  +    ++   FQYG WL+ 
Subjt:  LGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLN-QDTGSFQYGSWLKF

Query:  NGSNPRRRRKNSSVNEGKDNSS
          + PR+++  SS  +GK   S
Subjt:  NGSNPRRRRKNSSVNEGKDNSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding1.2e-0433.78Show/hide
Query:  LGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMV
        +   LGE + +D +++        R+KV MD ++PLR    V   S R    I  +YE+L   C NC R+ H V
Subjt:  LGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAAAGACTGGGAGATCCCCTGGGAGAATTTCTGGAAGTTGATTGTGACCAGGATGACCTTTGCTGGGGTGAAAATCCAAGGATTAAGGTTTTGATGGATATATC
TAAACCTTTAAGGAGAGGAATTTGGGTTGATTCTGGATCTGATCGAGGAAGCATTTGGATTGATATTAAATATGAGAGATTACCTGATTTCTGTTATAATTGTGGAAGAA
TTGGGCATATGGTAAAAGAACGCAATTTCAATCCAGAGTTTCTCAATCAAGATACGGGTTCTTTTCAATATGGAAGTTGGCTCAAGTTCAATGGAAGCAATCCAAGGAGA
AGAAGGAAGAATTCATCGGTAAATGAAGGAAAAGATAATTCTTCTGATAATTCTTCTGATAATTCTTTTTCATCTCAACGGGCATTCAATAAAAATCAAGGAAACTCTCG
TATGGCATCGAAACCGATTCAAGTTGTAGATAATGTTTTTCAGGGGATGAGAACAGAAGACACGAATCTAGTTAATAAGGTTGTCCATATTGATCTTAATAAGGGTCCTA
GAGATTCTACTACAAATGAAAATCAAGATAAGGATCATATAGAAGAAGATATCAATATGTTCACACTGAAAGAGAATACGAATATTTTGACTACTCCTTTATGTCATATT
CAGTCTGAGATGGTTTCTTCCAAGGGTTCTACATTTGGAAAATGGAAAAGAAGGGCTAGATCGGTTAATATTTCTGACAGTCCAATGTTGGAGTCCCAAAAAGATTGCAA
AAGGAAAGGTGTAGAATCAGTCTTTACTACTAAAACCAAATTGAGAAGAGGGGTCTCGGAGCCTAATGTTATAGTTTTTAAATTCAATGAAGTGGCAGAGGCACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAAAGACTGGGAGATCCCCTGGGAGAATTTCTGGAAGTTGATTGTGACCAGGATGACCTTTGCTGGGGTGAAAATCCAAGGATTAAGGTTTTGATGGATATATC
TAAACCTTTAAGGAGAGGAATTTGGGTTGATTCTGGATCTGATCGAGGAAGCATTTGGATTGATATTAAATATGAGAGATTACCTGATTTCTGTTATAATTGTGGAAGAA
TTGGGCATATGGTAAAAGAACGCAATTTCAATCCAGAGTTTCTCAATCAAGATACGGGTTCTTTTCAATATGGAAGTTGGCTCAAGTTCAATGGAAGCAATCCAAGGAGA
AGAAGGAAGAATTCATCGGTAAATGAAGGAAAAGATAATTCTTCTGATAATTCTTCTGATAATTCTTTTTCATCTCAACGGGCATTCAATAAAAATCAAGGAAACTCTCG
TATGGCATCGAAACCGATTCAAGTTGTAGATAATGTTTTTCAGGGGATGAGAACAGAAGACACGAATCTAGTTAATAAGGTTGTCCATATTGATCTTAATAAGGGTCCTA
GAGATTCTACTACAAATGAAAATCAAGATAAGGATCATATAGAAGAAGATATCAATATGTTCACACTGAAAGAGAATACGAATATTTTGACTACTCCTTTATGTCATATT
CAGTCTGAGATGGTTTCTTCCAAGGGTTCTACATTTGGAAAATGGAAAAGAAGGGCTAGATCGGTTAATATTTCTGACAGTCCAATGTTGGAGTCCCAAAAAGATTGCAA
AAGGAAAGGTGTAGAATCAGTCTTTACTACTAAAACCAAATTGAGAAGAGGGGTCTCGGAGCCTAATGTTATAGTTTTTAAATTCAATGAAGTGGCAGAGGCACCTTGA
Protein sequenceShow/hide protein sequence
MAKRLGDPLGEFLEVDCDQDDLCWGENPRIKVLMDISKPLRRGIWVDSGSDRGSIWIDIKYERLPDFCYNCGRIGHMVKERNFNPEFLNQDTGSFQYGSWLKFNGSNPRR
RRKNSSVNEGKDNSSDNSSDNSFSSQRAFNKNQGNSRMASKPIQVVDNVFQGMRTEDTNLVNKVVHIDLNKGPRDSTTNENQDKDHIEEDINMFTLKENTNILTTPLCHI
QSEMVSSKGSTFGKWKRRARSVNISDSPMLESQKDCKRKGVESVFTTKTKLRRGVSEPNVIVFKFNEVAEAP