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HG10014410 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014410
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box domain-containing protein
Genome locationChr02:10925146..10925514
RNA-Seq ExpressionHG10014410
SyntenyHG10014410
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A328DDQ2 CCHC-type domain-containing protein9.2e-0439.29Show/hide
Query:  PVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMIN--GFSGIEADVANLIVDIKKLATSFSSVILQHVSHSHNSIAHSLVR
        P+ AEA A  E+L  +  + +Q  ++ SD F V+  IN  G S   +   +LI D K L  SF SV++ HV  S N +AH+L R
Subjt:  PVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMIN--GFSGIEADVANLIVDIKKLATSFSSVILQHVSHSHNSIAHSLVR
A0A328DZR7 F-box domain-containing protein9.2e-0439.29Show/hide
Query:  PVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMIN--GFSGIEADVANLIVDIKKLATSFSSVILQHVSHSHNSIAHSLVR
        P+ AEA A  E+L  +  + +Q  ++ SD F V+  IN  G S   +   +LI D K L  SF SV++ HV  S N +AH+L R
Subjt:  PVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMIN--GFSGIEADVANLIVDIKKLATSFSSVILQHVSHSHNSIAHSLVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCATCTTTTGGCTCTATTATTGCTTCTCTTTTCGGTTGTAGAGAGGTAGAGCTTAGTCCTGTTTGTGCTGAAGCTTTTGCTGTCTTTGAAAGTCTTCGTTTAGT
GGATCGGATGGACCTCCAACGTCTGCTTGTCCTGTCTGATTCATTTGCAGTCATTCGTATGATCAATGGGTTCTCGGGCATTGAAGCGGATGTAGCAAACTTGATTGTTG
ACATAAAGAAGTTGGCTACTTCTTTTTCATCGGTGATTTTGCAGCATGTGTCTCATTCTCACAATTCTATAGCTCATTCTCTAGTTAGGATGAGGTTTATGGGATTGTAT
GGTTTGATTCTTAAGGGTGCTCTTACAAAGGTATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCATCTTTTGGCTCTATTATTGCTTCTCTTTTCGGTTGTAGAGAGGTAGAGCTTAGTCCTGTTTGTGCTGAAGCTTTTGCTGTCTTTGAAAGTCTTCGTTTAGT
GGATCGGATGGACCTCCAACGTCTGCTTGTCCTGTCTGATTCATTTGCAGTCATTCGTATGATCAATGGGTTCTCGGGCATTGAAGCGGATGTAGCAAACTTGATTGTTG
ACATAAAGAAGTTGGCTACTTCTTTTTCATCGGTGATTTTGCAGCATGTGTCTCATTCTCACAATTCTATAGCTCATTCTCTAGTTAGGATGAGGTTTATGGGATTGTAT
GGTTTGATTCTTAAGGGTGCTCTTACAAAGGTATCTTAG
Protein sequenceShow/hide protein sequence
MESSFGSIIASLFGCREVELSPVCAEAFAVFESLRLVDRMDLQRLLVLSDSFAVIRMINGFSGIEADVANLIVDIKKLATSFSSVILQHVSHSHNSIAHSLVRMRFMGLY
GLILKGALTKVS