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HG10014539 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014539
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposable element Tf2
Genome locationChr02:13846650..13846859
RNA-Seq ExpressionHG10014539
SyntenyHG10014539
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]8.3e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    EDA S A VN+     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.3e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    ED  S A VNN     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

KAA0060292.1 hypothetical protein E6C27_scaffold22G00670 [Cucumis melo var. makuwa]5.7e-0549.28Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSE-GNRQEDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQP
        MS+LAG GSQ  F  V+NTV  Q+S+  + Q +A+S   +NN    DDE+D++ Y  YD++DP LDSQP
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSE-GNRQEDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.3e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    ED  S A VNN     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.3e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    ED  S A VNN     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein4.0e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    EDA S A VN+     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

A0A5A7UVN1 Retrotransposable element Tf24.0e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    ED  S A VNN     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

A0A5A7UWR6 Uncharacterized protein2.8e-0549.28Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSE-GNRQEDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQP
        MS+LAG GSQ  F  V+NTV  Q+S+  + Q +A+S   +NN    DDE+D++ Y  YD++DP LDSQP
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSE-GNRQEDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQP

A0A5A7V6D1 Retrotransposable element Tf23.1e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    ED  S A VNN     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

A0A5A7VIK9 Retrotransposable element Tf24.0e-0452.11Show/hide
Query:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH
        MSTLAGA +Q  F SV+N V+  LS+ N    ED  S A VNN     D+ DYDPY G D++DP LD+QP+
Subjt:  MSTLAGAGSQANFASVLNTVLNQLSEGNRQ--EDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACATTAGCTGGAGCAGGATCACAAGCTAATTTTGCCTCGGTCCTCAATACAGTTCTCAACCAGCTTTCAGAAGGCAATCGTCAAGAAGATGCACACTCATCTGC
GTATGTAAACAATAATGAGATATCAGACGACGAAGAGGACTACGATCCTTACGCCGGCTATGATCTCGATGATCCGTTATTAGATTCACAGCCACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTACATTAGCTGGAGCAGGATCACAAGCTAATTTTGCCTCGGTCCTCAATACAGTTCTCAACCAGCTTTCAGAAGGCAATCGTCAAGAAGATGCACACTCATCTGC
GTATGTAAACAATAATGAGATATCAGACGACGAAGAGGACTACGATCCTTACGCCGGCTATGATCTCGATGATCCGTTATTAGATTCACAGCCACATTGA
Protein sequenceShow/hide protein sequence
MSTLAGAGSQANFASVLNTVLNQLSEGNRQEDAHSSAYVNNNEISDDEEDYDPYAGYDLDDPLLDSQPH