CuGenDBv2

Gene ID	HG10014606
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Chlororespiratory reduction 3, putative isoform 1
Genome location	Chr02:15969257..15972112
RNA-Seq Expression	HG10014606
Synteny	HG10014606
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR038931 - Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600832.1 putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-69

85.19

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVA+ASLNP+DD HSPP KTNGAA+TI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL
        MKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASG+IKLPFNTPFL++LL
Subjt:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL

XP_022942899.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata]

8.0e-69

85.19

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVA+ASLNP+DD HSPP KTNGAA+TI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL
        MKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASG+IKLPFNTPFL++LL
Subjt:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL

XP_022985001.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita maxima]

3.0e-68

84.24

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE
        MACF CISV+KNVALASLNP+DD HSPP KTNGAAETI +NNP+LR   RRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYE
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE

Query:  GPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL
        G LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASG+IKLPFNTPFL++LL
Subjt:  GPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL

XP_023511915.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp. pepo]

9.4e-70

86.42

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVALASLNP+DD HSPP KTNGAAETI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL
        MKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASG+IKLPFNTPFL++LL
Subjt:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL

XP_038893324.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Benincasa hispida]

9.1e-73

88.34

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MA F  IS++KNV LASLNP DD HSPP KTNGAAETI INNPRLRRRLPKPRRPSVIEIERAIGGG       RDLEEDRKAAFDMFLMSFTGKYEGP+
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM
        MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASG+IKLPFNTPFLNELLM
Subjt:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJA3 Uncharacterized protein

3.2e-63

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Query:  MACFLCISVSKNVALASLN--PNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEG
        MA    IS +KNVA ASLN  P+   HSPPLKTN AA TI INNPRLRR+L  P RPS+IEIERAIGGG       R+LEED+KAAFDMFLMSFTGKYE 
Subjt:  MACFLCISVSKNVALASLN--PNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEG

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM
        PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASG+IKLPF+TPFLNELLM
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

A0A1S3CM65 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1

6.2e-67

81.18

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Query:  GTAMACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFT
        GT MA    IS++KNVALASLNPN       HSPPLKTN AA+TI I  PRLR +L  PRRPSVIEIERAIGGG       RDLEED+KAAFDMFLMSFT
Subjt:  GTAMACFLCISVSKNVALASLNPN----DDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFT

Query:  GKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM
        GKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASG+IKLPFNTPFLNELLM
Subjt:  GKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

A0A6J1DQ49 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

2.0e-62

79.27

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Query:  AMACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGP
        A+A F CISV+KNVALASLN +DD HSP  K NG A+TI I N    RRLPKPRRPSVIEIERAIG G       RDLEEDRK  FDMFL+SFT KYEGP
Subjt:  AMACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGP

Query:  LMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM
        LMKKLRETGEWVTNQTETKFQASGKWFLLFTFQW+LPIWALSLLVASG+IKLPF+TPFL+ELLM
Subjt:  LMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

A0A6J1FSN9 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

3.9e-69

85.19

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL
        MACF CISV+KNVA+ASLNP+DD HSPP KTNGAA+TI I NPRLRRRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYEG L
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYEGPL

Query:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL
        MKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASG+IKLPFNTPFL++LL
Subjt:  MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL

A0A6J1J6W0 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

1.5e-68

84.24

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Query:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE
        MACF CISV+KNVALASLNP+DD HSPP KTNGAAETI +NNP+LR   RRLPKPRRPSVIEIERAIG G       RDLEEDRKAAFDMFLMSFTGKYE
Subjt:  MACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLR---RRLPKPRRPSVIEIERAIGGG-------RDLEEDRKAAFDMFLMSFTGKYE

Query:  GPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL
        G LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASG+IKLPFNTPFL++LL
Subjt:  GPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELL

SwissProt top hits

e value

%identity

Alignment

Q9ZVE7 Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

5.8e-22

45.11

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Query:  PLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--RDL--EEDRKAAFDMFLMSFTGKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFT
        PLK    ++ +   N + R       +PS+ +IERA G G  RD   E D    FD  L+    K+E  + KKLRE GE    +TE K ++SGK  L+FT
Subjt:  PLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--RDL--EEDRKAAFDMFLMSFTGKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFT

Query:  FQWVLPIWALSLLVASGLIKLPFNTPFLNELLM
         QW+LPIW +SLLVA G+IKLPF+ PFL++L+M
Subjt:  FQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

Arabidopsis top hits

e value

%identity

Alignment

AT2G01590.1 chlororespiratory reduction 3

4.1e-23

45.11

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Query:  PLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--RDL--EEDRKAAFDMFLMSFTGKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFT
        PLK    ++ +   N + R       +PS+ +IERA G G  RD   E D    FD  L+    K+E  + KKLRE GE    +TE K ++SGK  L+FT
Subjt:  PLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGG--RDL--EEDRKAAFDMFLMSFTGKYEGPLMKKLRETGEWVTNQTETKFQASGKWFLLFT

Query:  FQWVLPIWALSLLVASGLIKLPFNTPFLNELLM
         QW+LPIW +SLLVA G+IKLPF+ PFL++L+M
Subjt:  FQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

Sequences

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CDS sequence

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ATGGTTTCTTATCTGTGGAAGAGTGGAACAGCAATGGCTTGCTTCCTCTGCATTTCTGTATCCAAAAATGTGGCTCTCGCTTCACTCAATCCCAACGACGACTGTCACTC
TCCTCCTCTCAAAACCAATGGCGCCGCCGAGACCATTCAGATCAACAATCCACGGCTACGGCGGCGGCTTCCGAAACCTCGTCGGCCCTCCGTTATTGAAATCGAACGTG
CTATTGGTGGCGGAAGGGATTTGGAAGAAGATAGGAAGGCTGCATTTGACATGTTTTTGATGAGTTTTACGGGAAAATATGAAGGACCACTCATGAAAAAGCTTCGTGAG
ACTGGGGAATGGGTAACTAATCAAACTGAAACCAAATTTCAAGCTTCGGGGAAATGGTTTCTGCTGTTTACATTTCAATGGGTTCTTCCAATTTGGGCATTGTCACTCCT
TGTGGCTTCTGGGCTCATTAAGCTACCATTCAACACTCCATTTCTTAATGAACTACTCATGTAA

mRNA sequence

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Protein sequence

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MVSYLWKSGTAMACFLCISVSKNVALASLNPNDDCHSPPLKTNGAAETIQINNPRLRRRLPKPRRPSVIEIERAIGGGRDLEEDRKAAFDMFLMSFTGKYEGPLMKKLRE
TGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGLIKLPFNTPFLNELLM

HG10014606 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome