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HG10014613 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014613
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAP complex subunit sigma
Genome locationChr02:16062167..16067612
RNA-Seq ExpressionHG10014613
SyntenyHG10014613
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR000804 - Clathrin adaptor complex, small chain
IPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603975.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3888Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        PVEKQQELIRSV+GVLCSRAENVSNFVEAESIFG DSRLVYKHFATLYFV VFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNY+K+ S+
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]1.3e-3989Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        P+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFVLVFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ S+
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

XP_011655957.1 AP-3 complex subunit sigma [Cucumis sativus]4.9e-3988Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        P+EKQQELIRSVYGVLCSRAENVSNFVE ESIFGLDS LVYKHFATLYFVLVFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ ++
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

XP_023543862.1 AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo]1.4e-3887.13Show/hide
Query:  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSS
        +PVEKQQELIRSV+GVLCSRAENVSNFVEAESIFG DSRLVYKHFATLYFV VFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNY+K+ S
Subjt:  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSS

Query:  L
        +
Subjt:  L

XP_038893159.1 AP-3 complex subunit sigma [Benincasa hispida]2.2e-3990Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFG DSRLVYKHFATLYFVLVFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ ++
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

TrEMBL top hitse value%identityAlignment
A0A1S3BT37 AP complex subunit sigma6.2e-4089Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        P+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFVLVFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ S+
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

A0A1U8N8R1 AP complex subunit sigma2.2e-3777.36Show/hide
Query:  KTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNY
        K  + + VEKQQELIR V+ VLCSRAENVSNF++AESIFGLDSRLVYKHFATLYFV VF+SSENELA+LDLIQ    SVFVETLDKCF+NVCELD+VFNY
Subjt:  KTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNY

Query:  SKVSSL
        SK+ ++
Subjt:  SKVSSL

A0A6J1GFL2 AP complex subunit sigma9.9e-3886Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        PVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFV VFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVF+Y+K+ S+
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

A0A6J1GFN8 AP-3 complex subunit sigma-like isoform X11.3e-3788.66Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV
        PVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFV VFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVF+Y+KV
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV

A0A6J1IUE1 AP complex subunit sigma2.6e-3887Show/hide
Query:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL
        PVEKQQELIRSV+GVLCSRAENVSNFVEAESIFG DSR+VYKHFATLYFV VFNSSENELAMLDLIQ     VFVETLDKCFKNVCELDLVFNY+K+ S+
Subjt:  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL

SwissProt top hitse value%identityAlignment
P59780 AP-3 complex subunit sigma-27.4e-2252.48Show/hide
Query:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK
        Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SSE+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  K
Subjt:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK

Query:  V
        V
Subjt:  V

Q1JQA3 AP-3 complex subunit sigma-27.4e-2252.48Show/hide
Query:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK
        Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SSE+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  K
Subjt:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK

Query:  V
        V
Subjt:  V

Q5RDP9 AP-3 complex subunit sigma-27.4e-2252.48Show/hide
Query:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK
        Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SSE+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  K
Subjt:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK

Query:  V
        V
Subjt:  V

Q8BSZ2 AP-3 complex subunit sigma-27.4e-2252.48Show/hide
Query:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK
        Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SSE+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  K
Subjt:  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK

Query:  V
        V
Subjt:  V

Q8VZ37 AP-3 complex subunit sigma4.0e-3676.24Show/hide
Query:  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSS
        +PVEKQQELIR V+ VLCSR ENVSNF+E ES+FG DSRLVYKH+ATLYFVLVF+ SENELAMLDLIQ     V VETLDKCF NVCELD+VFNYSK+ +
Subjt:  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSS

Query:  L
        +
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein1.5e-0933.33Show/hide
Query:  LQQRMRPATKTEQTMPVEKQQ--ELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFK
        LQ R       +  +P+E+ +  ++   V+ ++ +R    +NFVE  +      +++Y+ +A L+F +  + ++NELA L+     ++ +FVE LD  F 
Subjt:  LQQRMRPATKTEQTMPVEKQQ--ELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFK

Query:  NVCELDLVFNYSKV
        NVCELDLVFN+ KV
Subjt:  NVCELDLVFNYSKV

AT2G17380.1 associated protein 191.2e-1134.95Show/hide
Query:  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFN
        TK       +++ ++IR + GV+ +R   + NF+E         ++VYK +A+LYF +  + ++NEL +L++I       +VE LD+ F +VCELDL+FN
Subjt:  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFN

Query:  YSK
        + K
Subjt:  YSK

AT3G50860.1 Clathrin adaptor complex small chain family protein2.9e-3776.24Show/hide
Query:  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSS
        +PVEKQQELIR V+ VLCSR ENVSNF+E ES+FG DSRLVYKH+ATLYFVLVF+ SENELAMLDLIQ     V VETLDKCF NVCELD+VFNYSK+ +
Subjt:  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSS

Query:  L
        +
Subjt:  L

AT4G35410.1 Clathrin adaptor complex small chain family protein4.2e-1236.54Show/hide
Query:  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFN
        TK       +++ ++IR + GV+ +R   + NFVE         ++VYK +A+LYF +  +  +NEL +L++I       +VE LD+ F +VCELDL+FN
Subjt:  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFN

Query:  YSKV
        + KV
Subjt:  YSKV

AT4G35410.2 Clathrin adaptor complex small chain family protein1.2e-1135.92Show/hide
Query:  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFN
        TK       +++ ++IR + GV+ +R   + NFVE         ++VYK +A+LYF +  +  +NEL +L++I       +VE LD+ F +VCELDL+FN
Subjt:  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFN

Query:  YSK
        + K
Subjt:  YSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATCGAACATGAAACTCAACTTCAACAGCGAATGCGACCTGCGACAAAGACGGAGCAGACGATGCCTGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGG
GGTACTTTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTCTGGACTCTCGTCTTGTATACAAACACTTTGCCACCCTTTATTTCGTGC
TTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAG
CTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATCGAACATGAAACTCAACTTCAACAGCGAATGCGACCTGCGACAAAGACGGAGCAGACGATGCCTGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGG
GGTACTTTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTCTGGACTCTCGTCTTGTATACAAACACTTTGCCACCCTTTATTTCGTGC
TTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAG
CTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGA
Protein sequenceShow/hide protein sequence
MNIEHETQLQQRMRPATKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCE
LDLVFNYSKVSSLS