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HG10014635 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014635
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr02:16865468..16865895
RNA-Seq ExpressionHG10014635
SyntenyHG10014635
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW17671.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.4e-0735.85Show/hide
Query:  GMSIDQVEVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDSTHILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGI
        G+++DQ  +  +A  + C+   WP + LGL L G  N  A    D  + LSLFKIP+  A  IERL       G       HLV+W+ V +  + GGLG+
Subjt:  GMSIDQVEVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDSTHILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGI

Query:  QALTER
          ++ R
Subjt:  QALTER

RVW82251.1 putative ribonuclease H protein [Vitis vinifera]2.7e-0438.83Show/hide
Query:  EVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDST------HILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQ
        EV+ +A +IGCR  Q P + LGL L G  N   S    ST      + +SLF++P   A  +E L       G +     HLVKWE V  +   GGLGI+
Subjt:  EVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDST------HILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQ

Query:  ALT
         LT
Subjt:  ALT

VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]1.6e-0435.35Show/hide
Query:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE
        + +K+  R  +W   CL     G   T    V+ S  ++ +SLFK+P+  A  +E+L      +G       HLV+WE+VT+S   GGLGI +L ER E
Subjt:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE

XP_009794949.1 PREDICTED: uncharacterized protein LOC104241713 [Nicotiana sylvestris]3.5e-0433.04Show/hide
Query:  MGMSIDQVEV-ETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHG
        +G     VEV   +  K+  R   W    L +   G   T+ S VIDS  T+ +SL+ +PSK    +++L +    KG++  +  HLVKW KVT+    G
Subjt:  MGMSIDQVEV-ETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHG

Query:  GLGIQALTERRE
        G GI+ L +  +
Subjt:  GLGIQALTERRE

XP_033509400.1 uncharacterized protein LOC117274268 [Nicotiana tomentosiformis]3.5e-0439.36Show/hide
Query:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQAL
        I  K   R   W    L +   G   T  + V+DS  T+ LSLF IPSK    ++++      +G+ST    HLVKW KVT+  S+GGLGI+ L
Subjt:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQAL

TrEMBL top hitse value%identityAlignment
A0A438C362 Transposon TX1 uncharacterized 149 kDa protein1.6e-0735.85Show/hide
Query:  GMSIDQVEVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDSTHILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGI
        G+++DQ  +  +A  + C+   WP + LGL L G  N  A    D  + LSLFKIP+  A  IERL       G       HLV+W+ V +  + GGLG+
Subjt:  GMSIDQVEVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDSTHILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGI

Query:  QALTER
          ++ R
Subjt:  QALTER

A0A5E4FU33 zf-RVT domain-containing protein (Fragment)7.6e-0535.35Show/hide
Query:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE
        + +K+  R  +W   CL     G   T    V+ S  ++ +SLFK+P+  A  +E+L      +G       HLV+WE+VT+S   GGLGI +L ER E
Subjt:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE

M5VS59 Reverse transcriptase domain-containing protein (Fragment)9.9e-0535.35Show/hide
Query:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE
        + +K+  R  +W   CL     G   T    V+ S  ++ +SLFK+P   A  +E+L      +G       HLV+WE+VT+S   GGLGI +L ER E
Subjt:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE

M5WKV4 Reverse transcriptase domain-containing protein (Fragment)9.9e-0535.35Show/hide
Query:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE
        + +K+  R  +W   CL     G   T    V+ S  ++ +SLFK+P   A  +E+L      +G       HLV+WE+VT+S   GGLGI +L ER E
Subjt:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE

M5XHS0 Reverse transcriptase domain-containing protein (Fragment)9.9e-0535.35Show/hide
Query:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE
        + +K+  R  +W   CL     G   T    V+ S  ++ +SLFK+P   A  +E+L      +G       HLV+WE+VT+S   GGLGI +L ER E
Subjt:  IANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDS--THILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATGAGCATCGATCAAGTAGAGGTAGAAACCATTGCCAACAAAATTGGTTGTAGACAATGCCAATGGCCAAATATGTGCCTTGGCCTCACCTTATTTGGGTCGTC
TAACACTTATGCAAGCCATGTTATCGATTCTACCCACATACTATCTTTGTTCAAGATACCTTCTAAGGCGGCATTGCTTATTGAAAGACTTACCGAAATTTTGCAGAAGA
AAGGAAGCTCAACTTATTATGGCACCCACCTTGTTAAATGGGAAAAGGTCACAAGATCCACCTCTCATGGAGGCCTAGGCATACAAGCTTTGACGGAAAGAAGAGAGCCC
TCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATGAGCATCGATCAAGTAGAGGTAGAAACCATTGCCAACAAAATTGGTTGTAGACAATGCCAATGGCCAAATATGTGCCTTGGCCTCACCTTATTTGGGTCGTC
TAACACTTATGCAAGCCATGTTATCGATTCTACCCACATACTATCTTTGTTCAAGATACCTTCTAAGGCGGCATTGCTTATTGAAAGACTTACCGAAATTTTGCAGAAGA
AAGGAAGCTCAACTTATTATGGCACCCACCTTGTTAAATGGGAAAAGGTCACAAGATCCACCTCTCATGGAGGCCTAGGCATACAAGCTTTGACGGAAAGAAGAGAGCCC
TCTTAG
Protein sequenceShow/hide protein sequence
MGMSIDQVEVETIANKIGCRQCQWPNMCLGLTLFGSSNTYASHVIDSTHILSLFKIPSKAALLIERLTEILQKKGSSTYYGTHLVKWEKVTRSTSHGGLGIQALTERREP
S