; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10014789 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014789
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPHD finger protein ALFIN-LIKE 2-like
Genome locationChr02:19941956..19943003
RNA-Seq ExpressionHG10014789
SyntenyHG10014789
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR021998 - Alfin, N-terminal
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463243.1 PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo]7.5e-6398.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGAQLNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

XP_011654991.1 PHD finger protein ALFIN-LIKE 2 [Cucumis sativus]7.5e-6398.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGAQLNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

XP_022156923.1 PHD finger protein ALFIN-LIKE 2-like [Momordica charantia]5.9e-6094.17Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPRSVEDIFKDY+ARR GLVRALTYDVDEFYSLCDPEKENLCLYGH NESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

XP_022957000.1 PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata]1.7e-5994.17Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSS R+VEDIFKDYNARRTGLVRALTYDVD FYSLCDPEKENLCLYGHP+ESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

XP_038893084.1 PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida]7.5e-6398.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGAQLNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

TrEMBL top hitse value%identityAlignment
A0A0A0KP44 Uncharacterized protein4.7e-63100Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNER
        LLSVAFYFGAQLNRNER
Subjt:  LLSVAFYFGAQLNRNER

A0A1S3CJ59 PHD finger protein ALFIN-LIKE 2-like3.6e-6398.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGAQLNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

A0A5D3DUV1 PHD finger protein ALFIN-LIKE 2-like3.6e-6398.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGAQLNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

A0A6J1DRX5 PHD finger protein ALFIN-LIKE 2-like2.9e-6094.17Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPRSVEDIFKDY+ARR GLVRALTYDVDEFYSLCDPEKENLCLYGH NESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

A0A6J1J9S6 PHD finger protein ALFIN-LIKE 2-like8.3e-6094.17Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASISSS R+VEDIFKDYNARRTGLVRALTYDVD FYSLCDPEKENLCLYGHP+ESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSVAFYFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

SwissProt top hitse value%identityAlignment
A2Y0Q2 PHD finger protein ALFIN-LIKE 11.5e-5076.52Show/hide
Query:  SSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVA
        S+PRSVEDIFKD+ ARRT ++RALT+DV++FY+ CDPEKENLCLYG+ NE+W+V LPAEEVP+ELPEPALGINFARDGM RRDWL+LVAVHSD WL+SVA
Subjt:  SSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVA

Query:  FYFGAQLNRNERSVL
        FY+ A+LNRN+R  L
Subjt:  FYFGAQLNRNERSVL

B8B8I3 PHD finger protein ALFIN-LIKE 25.6e-5380.67Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A +S +PR+VEDIFKD++ RR GLVRALT DVDEFY  CDPEKENLCLYGHPN  WEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERSVL
        LSVAF+FGA+LN NER  L
Subjt:  LSVAFYFGAQLNRNERSVL

Q8H383 PHD finger protein ALFIN-LIKE 25.6e-5380.67Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A +S +PR+VEDIFKD++ RR GLVRALT DVDEFY  CDPEKENLCLYGHPN  WEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERSVL
        LSVAF+FGA+LN NER  L
Subjt:  LSVAFYFGAQLNRNERSVL

Q9FFF5 PHD finger protein ALFIN-LIKE 13.3e-5378.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ SS+PR+VE+IFKD++ RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSV+ YFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

Q9SRM4 PHD finger protein ALFIN-LIKE 22.4e-5683.19Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A++SS+PR+VE+IFKDY+ARR  L+RALT DVD+FYS CDPEKENLCLYGHPNESWEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCWL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERSVL
        LSV+FYFGA+LNRNER  L
Subjt:  LSVAFYFGAQLNRNERSVL

Arabidopsis top hitse value%identityAlignment
AT2G02470.1 alfin-like 68.8e-4670.43Show/hide
Query:  PRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFY
        PR+VE++F D+  RR GL++ALT D+ +FY  CDPEKENLCLYG PNE+WEV LP EEVP ELPEPALGINFARDGM+ +DW+SLVAVHSD WLLSVAFY
Subjt:  PRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFY

Query:  FGAQ--LNRNERSVL
        FGA+    +NER  L
Subjt:  FGAQ--LNRNERSVL

AT3G11200.1 alfin-like 21.7e-5783.19Show/hide
Query:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A++SS+PR+VE+IFKDY+ARR  L+RALT DVD+FYS CDPEKENLCLYGHPNESWEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCWL
Subjt:  ASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYFGAQLNRNERSVL
        LSV+FYFGA+LNRNER  L
Subjt:  LSVAFYFGAQLNRNERSVL

AT5G05610.1 alfin-like 12.3e-5478.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ SS+PR+VE+IFKD++ RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSV+ YFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

AT5G05610.2 alfin-like 12.3e-5478.33Show/hide
Query:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ SS+PR+VE+IFKD++ RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYFGAQLNRNERSVL
        LLSV+ YFGA+LNRNER  L
Subjt:  LLSVAFYFGAQLNRNERSVL

AT5G26210.1 alfin-like 41.4e-4674.29Show/hide
Query:  SPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAF
        +PR+VE++F+D+  RR G+++ALT DV EF+ LCDPEKENLCLYGHPNE WEV LPAEEVP ELPEP LGINFARDGM  +DWLSLVAVHSD WLL+VAF
Subjt:  SPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAF

Query:  YFGAQ
        +FGA+
Subjt:  YFGAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTA
CTCGCTTTGTGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCGG
CGCTAGGGATCAATTTTGCTAGAGATGGGATGAAGCGCCGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCT
CAACTCAACCGTAATGAGCGGTCCGTTTTGCCTGAGTTTGATCTCTTATTCTGTTGTGGTATACTGTCAGCTGGGAAAGTGGAGAAGATCATGTTCTTCTTGTCATTGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTA
CTCGCTTTGTGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCGG
CGCTAGGGATCAATTTTGCTAGAGATGGGATGAAGCGCCGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCT
CAACTCAACCGTAATGAGCGGTCCGTTTTGCCTGAGTTTGATCTCTTATTCTGTTGTGGTATACTGTCAGCTGGGAAAGTGGAGAAGATCATGTTCTTCTTGTCATTGTG
A
Protein sequenceShow/hide protein sequence
MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGA
QLNRNERSVLPEFDLLFCCGILSAGKVEKIMFFLSL