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HG10014800 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014800
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr02:20179724..20180062
RNA-Seq ExpressionHG10014800
SyntenyHG10014800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045138.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W   FRR L  RE+  W +I           G    +W   +N  F + SAK+L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA++ D D+T  DAW+  +  W   FRR L  RE++ W +I           G    +W   +   F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
KAA0058980.1 uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]2.4e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W  +FRR L  RE+  W +I           G    +W    N  F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.9e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W   FRR L  RE+  W +I           G    +W   +N  F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]2.4e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W  +FRR L  RE+  W +I           G    +W    N  F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
TrEMBL top hitse value%identityAlignment
A0A5A7TQI1 LINE-1 retrotransposable element ORF2 protein5.1e-0933.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W   FRR L  RE+  W +I           G    +W   +N  F + SAK+L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein8.7e-0933.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA++ D D+T  DAW+  +  W   FRR L  RE++ W +I           G    +W   +   F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
A0A5A7UV84 Reverse transcriptase domain-containing protein1.1e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W  +FRR L  RE+  W +I           G    +W    N  F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein3.3e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W   FRR L  RE+  W +I           G    +W   +N  F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
A0A5D3CI86 Reverse transcriptase domain-containing protein1.1e-0833.33Show/hide
Query:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
        NG    FW  +WS +G L   YP+ FA+T D +++  DAW+  +  W  +FRR L  RE+  W +I           G    +W    N  F + SAK L
Subjt:  NGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL

Query:  LN
        ++
Subjt:  LN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACAATATTCAGAGGAGAGTCATAAATGGAACTTCTACTCTATTTTGGAACCACGATTGGTCTACTGATGGTGTTTTAAAAGTCAAATACCCCAAATTTTTTGC
CATTACTGAGGATTTTGATGTGACTTTCTTCGATGCTTGGGATAGGCAAAATTTGATGTGGATTCCACATTTTCGCAGACCTCTTTTGCAACGTGAGAAGGATCTTTGGA
ACCAAATTAGTAGAAGTTGGCTTCCCCACCACCAAACTGATGGAGATGATTACTATAGTTGGCCATCTACTGCTAATGGATGGTTCATGGTTAAATCTGCCAAAAGCCTT
CTCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAACAATATTCAGAGGAGAGTCATAAATGGAACTTCTACTCTATTTTGGAACCACGATTGGTCTACTGATGGTGTTTTAAAAGTCAAATACCCCAAATTTTTTGC
CATTACTGAGGATTTTGATGTGACTTTCTTCGATGCTTGGGATAGGCAAAATTTGATGTGGATTCCACATTTTCGCAGACCTCTTTTGCAACGTGAGAAGGATCTTTGGA
ACCAAATTAGTAGAAGTTGGCTTCCCCACCACCAAACTGATGGAGATGATTACTATAGTTGGCCATCTACTGCTAATGGATGGTTCATGGTTAAATCTGCCAAAAGCCTT
CTCAACTAA
Protein sequenceShow/hide protein sequence
MVNNIQRRVINGTSTLFWNHDWSTDGVLKVKYPKFFAITEDFDVTFFDAWDRQNLMWIPHFRRPLLQREKDLWNQISRSWLPHHQTDGDDYYSWPSTANGWFMVKSAKSL
LN