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HG10014870 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014870
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
Genome locationChr02:21173396..21173698
RNA-Seq ExpressionHG10014870
SyntenyHG10014870
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019155730.1 PREDICTED: uncharacterized protein LOC109152486 [Ipomoea nil]1.4e-0440.74Show/hide
Query:  VLEAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQ
        V EA+ +   L  L   +++NI +ESDCL +    N+  VD+S V    VKQ     +D+G V  SHV+RS N +AH LA+
Subjt:  VLEAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQ

XP_019168039.1 PREDICTED: uncharacterized protein LOC109163789 [Ipomoea nil]1.1e-0443.04Show/hide
Query:  EAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQ
        EA+ I   L+ L SI ++NI +E+DCL  I+  N+   D+S V    VKQ      D+G V   HVRRS N +AH LA+
Subjt:  EAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQ

XP_019178142.1 PREDICTED: uncharacterized protein LOC109173362 [Ipomoea nil]1.4e-0435.96Show/hide
Query:  EAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQKVMEDQEVSI
        EA  +   L  L  +  S++++E+DCL   N  N++ VD+S V  + VKQ ++   D+G V+  HV+RS N +AH LAQ      + S+
Subjt:  EAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQKVMEDQEVSI

XP_019191037.1 PREDICTED: uncharacterized protein LOC109185555 [Ipomoea nil]1.8e-0444.3Show/hide
Query:  EAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQ
        EA+G+   L  L   +  +I+VESDCL   N  N+++ D S V    VKQ L   RD+G V  +HVRRS N +AH LA+
Subjt:  EAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQ

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.0e-1565Show/hide
Query:  VKVLEAMGICFGLETLLSINVSNILVESDCL-EIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAH
        V +LEA+ ICFGLE L SI++SNI+VESDCL E+INLLN+  VD SEVS F  ++A DRG +LGV+ FSHVRR +NVLA+
Subjt:  VKVLEAMGICFGLETLLSINVSNILVESDCL-EIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAH

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGGTCCTTGAAGCTATGGGCATTTGCTTTGGGCTTGAGACTCTGTTATCTATCAATGTTTCGAATATTTTGGTGGAGTCTGATTGCTTGGAGATCATCAATCT
GCTGAATAATGCTGCTGTCGACTATTCTGAAGTCTCTTTTTTTTTTGTTAAACAAGCTTTGGATAGAGGTAGGGATTTGGGAGTTGTCTTATTTTCCCATGTTCGTCGTA
GTCAGAATGTGCTAGCGCACTGTCTTGCGCAAAAAGTTATGGAGGATCAGGAGGTCTCTATTCTTGCCTCTCCTTATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGGTCCTTGAAGCTATGGGCATTTGCTTTGGGCTTGAGACTCTGTTATCTATCAATGTTTCGAATATTTTGGTGGAGTCTGATTGCTTGGAGATCATCAATCT
GCTGAATAATGCTGCTGTCGACTATTCTGAAGTCTCTTTTTTTTTTGTTAAACAAGCTTTGGATAGAGGTAGGGATTTGGGAGTTGTCTTATTTTCCCATGTTCGTCGTA
GTCAGAATGTGCTAGCGCACTGTCTTGCGCAAAAAGTTATGGAGGATCAGGAGGTCTCTATTCTTGCCTCTCCTTATCTTTAG
Protein sequenceShow/hide protein sequence
MVKVLEAMGICFGLETLLSINVSNILVESDCLEIINLLNNAAVDYSEVSFFFVKQALDRGRDLGVVLFSHVRRSQNVLAHCLAQKVMEDQEVSILASPYL