; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10014908 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014908
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRadical_SAM domain-containing protein
Genome locationChr02:21699770..21701547
RNA-Seq ExpressionHG10014908
SyntenyHG10014908
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0034470 - ncRNA processing (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR013785 - Aldolase-type TIM barrel
IPR040072 - Methyltransferase (Class A)


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147696.1 uncharacterized protein LOC101221561 [Cucumis sativus]4.8e-5458.05Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIAIS ALIHQVCSPSVARA RPRCVAAVPSRNLSTSISP AR SPEAPKVLIGLSDQELQQLA+DFGQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS                             QVFAIEDIF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

XP_008461658.1 PREDICTED: probable dual-specificity RNA methyltransferase RlmN [Cucumis melo]4.5e-5256.78Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIAIS ALIHQVCSPSVARA R RCVAAVPSRNLSTSISP A  SPEAPKVLIGLSDQELQQLA+DFGQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS                             QVFAIEDIF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAH+CLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

XP_022957587.1 uncharacterized protein LOC111458934 [Cucurbita moschata]3.4e-5255.93Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIA+SMALIHQVCSPSVARA RPRCVAAVPSR  STSISPPARASPE+PKVLIGLS++ELQQLAVD GQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKN+KGSVRLTACISS                             QVFAIE+IF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

XP_022989725.1 uncharacterized protein LOC111486721 [Cucurbita maxima]7.7e-5255.93Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MI ISMALIHQVCSPSVARA RPRCVAAVPSR  STSISPPARASPE+PKVLIGLS++ELQQLAVD GQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKN+KGSVRLTACISS                             QVFAIE+IF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

XP_038892136.1 probable dual-specificity RNA methyltransferase RlmN [Benincasa hispida]5.1e-5659.32Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MI ISMALIHQVCSPSVARA RPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS                             QVFAIEDIF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

TrEMBL top hitse value%identityAlignment
A0A0A0KLM9 Radical_SAM domain-containing protein2.3e-5458.05Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIAIS ALIHQVCSPSVARA RPRCVAAVPSRNLSTSISP AR SPEAPKVLIGLSDQELQQLA+DFGQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS                             QVFAIEDIF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

A0A1S3CGI7 probable dual-specificity RNA methyltransferase RlmN2.2e-5256.78Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIAIS ALIHQVCSPSVARA R RCVAAVPSRNLSTSISP A  SPEAPKVLIGLSDQELQQLA+DFGQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS                             QVFAIEDIF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAH+CLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

A0A5A7U9X5 Putative dual-specificity RNA methyltransferase RlmN6.3e-5257.08Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIAIS ALIHQVCSPSVARA R RCVAAVPSRNLSTSISP A  SPEAPKVLIGLSDQELQQLA+DFGQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS                             QVFAIEDIF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTI
        N RVTNVVFMGMGEPMLNMK +LEAH+CLNK +
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTI

A0A6J1GZJ0 uncharacterized protein LOC1114589341.7e-5255.93Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MIA+SMALIHQVCSPSVARA RPRCVAAVPSR  STSISPPARASPE+PKVLIGLS++ELQQLAVD GQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKN+KGSVRLTACISS                             QVFAIE+IF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

A0A6J1JN65 uncharacterized protein LOC1114867213.7e-5255.93Show/hide
Query:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------
        MI ISMALIHQVCSPSVARA RPRCVAAVPSR  STSISPPARASPE+PKVLIGLS++ELQQLAVD GQ                               
Subjt:  MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ-------------------------------

Query:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF
                                   LLLKLDDNRLIETVGIPVEDKN+KGSVRLTACISS                             QVFAIE+IF
Subjt:  ---------------------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIF

Query:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
        N RVTNVVFMGMGEPMLNMK +LEAHRCLNK ++ G
Subjt:  NRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

SwissProt top hitse value%identityAlignment
A5GNG9 Probable dual-specificity RNA methyltransferase RlmN1.5e-1034.31Show/hide
Query:  RASPEAPKVLIGLSDQELQQLAVD-FGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDI
        RAS +   V+IG   ++ +++A D   +LLL  DD   +ETVGIP +        RLT C+SS                             QV ++ ++
Subjt:  RASPEAPKVLIGLSDQELQQLAVD-FGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDI

Query:  FNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
          RR ++VVFMGMGEP+LN++ +L+A RCLN  +  G
Subjt:  FNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

B0C9F4 Probable dual-specificity RNA methyltransferase RlmN9.8e-1037.84Show/hide
Query:  LLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRC
        LLKL D ++IETVGIP +        RLT C+SS                             QV  +++ F +RV NVVFMGMGEP+LN++ +L A R 
Subjt:  LLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRC

Query:  LNKTIRKGNSS
        LN+ +  G  S
Subjt:  LNKTIRKGNSS

B1WU13 Probable dual-specificity RNA methyltransferase RlmN1.7e-0934.78Show/hide
Query:  LLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRC
        LL L D  +IETVGIP        S RLT C+SS                             QV  +++ F RRV++VVFMGMGEP+LN+K +++A + 
Subjt:  LLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRC

Query:  LNKTIRKGNSSKLERT----WRPVRLCLHTLAKTFIES
        LN+ +  G  S    T     + + L  H L  TF  S
Subjt:  LNKTIRKGNSSKLERT----WRPVRLCLHTLAKTFIES

B2J6D0 Probable dual-specificity RNA methyltransferase RlmN4.4e-1033.58Show/hide
Query:  EAPKVLIGLSDQELQQLAVD-FGQLLLKLDDNRLIETVGIPVEDKNNKG-SVRLTACISS-----------------------------QVFAIEDIFNR
        E  ++ IG S    + +A D   + LL+L D ++IETVGIP   +  +G   RLT C+S+                             QV  +++ F +
Subjt:  EAPKVLIGLSDQELQQLAVD-FGQLLLKLDDNRLIETVGIPVEDKNNKG-SVRLTACISS-----------------------------QVFAIEDIFNR

Query:  RVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKGNSS
        RV+NVVFMG+GEP+LN + +L A + LN+ I  G  S
Subjt:  RVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKGNSS

Q0I7M1 Probable dual-specificity RNA methyltransferase RlmN4.4e-1035.04Show/hide
Query:  RASPEAPKVLIG-LSDQELQQLAVDFGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDI
        RAS +   V +G L +QE +  A    +LLL  +D   +ETVGIP +        RLT C+SS                             QV +I ++
Subjt:  RASPEAPKVLIG-LSDQELQQLAVDFGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDI

Query:  FNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG
          RR ++VVFMGMGEP+LN++ +LE+ RCLN  +  G
Subjt:  FNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKG

Arabidopsis top hitse value%identityAlignment
AT1G60230.1 Radical SAM superfamily protein8.3e-0430.17Show/hide
Query:  LSDQELQQLAVDFGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQV------------------------FAIEDIFNRR--------VTNVVF
        LS ++++  +    ++L  LDD  +IETV IP +    +G  R T C+SSQV                           + ++ RR        +TNVVF
Subjt:  LSDQELQQLAVDFGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQV------------------------FAIEDIFNRR--------VTNVVF

Query:  MGMGEPMLNMKPMLEA
        MGMGEP  N+  +++A
Subjt:  MGMGEPMLNMKPMLEA

AT2G39670.1 Radical SAM superfamily protein6.1e-2336.65Show/hide
Query:  SVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ----------------------------------------------
        S+A  F       VPS    +  + PAR       VLIG+S+ ELQ+LA++ GQ                                              
Subjt:  SVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQ----------------------------------------------

Query:  ------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEP
                    LLLKL+DN LIETVGIPV+D + KG  RLTAC+SS                             QV AIED+F  RVTNVVFMGMGEP
Subjt:  ------------LLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEP

Query:  MLNMKPMLEAHRCLNKTIRKG
        MLN+K +L+AHRCLNK I  G
Subjt:  MLNMKPMLEAHRCLNKTIRKG

AT2G39670.2 Radical SAM superfamily protein6.1e-2354.55Show/hide
Query:  QLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAH
        +LLLKL+DN LIETVGIPV+D + KG  RLTAC+SS                             QV AIED+F  RVTNVVFMGMGEPMLN+K +L+AH
Subjt:  QLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISS-----------------------------QVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAH

Query:  RCLNKTIRKG
        RCLNK I  G
Subjt:  RCLNKTIRKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCCATTTCAATGGCGCTCATTCACCAAGTTTGCTCGCCGTCCGTCGCACGTGCATTCCGGCCTCGATGCGTCGCTGCCGTGCCTTCTCGGAACCTCTCCACCTC
CATATCCCCTCCCGCTCGGGCCTCTCCTGAAGCTCCCAAAGTGCTCATCGGCTTGTCGGACCAGGAGCTACAACAGCTTGCCGTGGACTTCGGCCAGTTATTGCTTAAGT
TGGATGATAACAGGCTGATTGAAACAGTTGGCATACCTGTGGAAGACAAAAACAATAAAGGTTCAGTTCGCCTCACTGCTTGCATCTCATCACAGGTATTTGCAATTGAG
GATATTTTCAACCGTAGGGTGACAAATGTAGTATTCATGGGAATGGGTGAACCAATGTTAAATATGAAACCAATGCTTGAAGCGCATCGGTGCTTGAACAAGACTATTAG
GAAAGGTAACTCTAGTAAGCTGGAGAGGACTTGGAGGCCTGTGCGACTGTGCCTTCACACTCTAGCAAAAACTTTCATTGAGAGTGAAATATACCGGAGGGCTTACTGCA
TTACAAGCATACAGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGCCATTTCAATGGCGCTCATTCACCAAGTTTGCTCGCCGTCCGTCGCACGTGCATTCCGGCCTCGATGCGTCGCTGCCGTGCCTTCTCGGAACCTCTCCACCTC
CATATCCCCTCCCGCTCGGGCCTCTCCTGAAGCTCCCAAAGTGCTCATCGGCTTGTCGGACCAGGAGCTACAACAGCTTGCCGTGGACTTCGGCCAGTTATTGCTTAAGT
TGGATGATAACAGGCTGATTGAAACAGTTGGCATACCTGTGGAAGACAAAAACAATAAAGGTTCAGTTCGCCTCACTGCTTGCATCTCATCACAGGTATTTGCAATTGAG
GATATTTTCAACCGTAGGGTGACAAATGTAGTATTCATGGGAATGGGTGAACCAATGTTAAATATGAAACCAATGCTTGAAGCGCATCGGTGCTTGAACAAGACTATTAG
GAAAGGTAACTCTAGTAAGCTGGAGAGGACTTGGAGGCCTGTGCGACTGTGCCTTCACACTCTAGCAAAAACTTTCATTGAGAGTGAAATATACCGGAGGGCTTACTGCA
TTACAAGCATACAGGAGTAA
Protein sequenceShow/hide protein sequence
MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVFAIE
DIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKTIRKGNSSKLERTWRPVRLCLHTLAKTFIESEIYRRAYCITSIQE