CuGenDBv2

Gene ID	HG10014921
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L23a
Genome location	Chr02:21853178..21853655
RNA-Seq Expression	HG10014921
Synteny	HG10014921
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600068.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-28

98.57

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_002284445.1 PREDICTED: 60S ribosomal protein L23a [Vitis vinifera]

1.7e-28

98.57

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_004147702.1 60S ribosomal protein L23a [Cucumis sativus]

3.4e-29

100

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_022943202.1 60S ribosomal protein L23a-like [Cucurbita moschata]

1.7e-28

98.57

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_034687096.1 60S ribosomal protein L23a [Vitis riparia]

1.7e-28

98.57

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KS61 50S ribosomal protein L23, chloroplastic

1.6e-29

100

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A164YKE7 Ribosomal_L23eN domain-containing protein

8.1e-29

98.57

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A1S3CFM9 50S ribosomal protein L23, chloroplastic

1.6e-29

100

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A5A7U4W7 50S ribosomal protein L23, chloroplastic

1.6e-29

100

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A5ARE4 Uncharacterized protein

8.1e-29

98.57

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

SwissProt top hits

e value

%identity

Alignment

O22644 60S ribosomal protein L23A

9.2e-30

94.29

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IK AVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q07761 60S ribosomal protein L23a

1.9e-30

95.71

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDI+A+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q8LD46 60S ribosomal protein L23a-1

8.4e-31

97.14

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q9AT35 60S ribosomal protein L23a

2.2e-31

98.57

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q9M3C3 60S ribosomal protein L23a-2

8.4e-31

97.14

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Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Arabidopsis top hits

e value

%identity

Alignment

AT2G39460.1 ribosomal protein L23AA

5.9e-32

97.14

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT2G39460.2 ribosomal protein L23AA

5.9e-32

97.14

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.1 ribosomal protein L23AB

5.9e-32

97.14

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.2 ribosomal protein L23AB

5.9e-32

97.14

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.3 ribosomal protein L23AB

5.9e-32

97.14

Show/hide

Query:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Sequences

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CDS sequence

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ATGAAGAAGATTGAGGATAACAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAA
AGTGAACACTTTAATCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGGTATCATCTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

HG10014921 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome