; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10014990 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10014990
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionexosome complex component RRP41 homolog
Genome locationChr02:22717147..22720613
RNA-Seq ExpressionHG10014990
SyntenyHG10014990
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3964871.1 hypothetical protein CMV_010887 [Castanea mollissima]9.9e-9773.68Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KA+GSAVFEMGNTKV+AAVYGPRE             VRCEY+MANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPD                MD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID+FENVMQLAIEGCKA+A+YIRE                           +MLENTKQLEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

XP_002530509.1 exosome complex component RRP41 homolog [Ricinus communis]7.6e-9773.31Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        ME+VSPEGLRLDGRRPMEMRQ+RA+IGAVSKA+GSAVFEMGNTKV+AAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD                MDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID FENVMQLA+EGCKA+A+YIRE                           ++LENTKQLEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]6.9e-9875.56Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKA+GSAVFEMGNTKV+AAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD                MDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID+FENVMQLAIEGCKAVASYIRE                           VMLENTK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]2.0e-9775.19Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD                MD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LP+D+FENVMQLAIEGCKAVA+YIRE                           VMLE+TK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]1.6e-10277.99Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD                MDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG
        LPIDVFENVMQLAIEGCKA+ASYIRE                           VML+NTKQLEYHRDG
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHRDG

TrEMBL top hitse value%identityAlignment
A0A6J1DWZ5 exosome complex component RRP41 homolog3.3e-9875.56Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKA+GSAVFEMGNTKV+AAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD                MDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID+FENVMQLAIEGCKAVASYIRE                           VMLENTK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

A0A6J1FNX1 exosome complex component RRP41 homolog9.7e-9875.19Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD                MD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LP+D+FENVMQLAIEGCKAVA+YIRE                           VMLE+TK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

A0A6J1JKC7 exosome complex component RRP41 homolog9.7e-9875.19Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD                MD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LP+D+FENVMQLAIEGCKAVA+YIRE                           VMLE+TK+LEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

A0A7N2MX64 Uncharacterized protein4.8e-9773.68Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KA+GSAVFEMGNTKV+AAVYGPRE             VRCEY+MANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPD                MD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID+FENVMQLAIEGCKA+A+YIRE                           +MLENTKQLEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

B9SWZ0 Exosome complex exonuclease RRP41, putative3.7e-9773.31Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        ME+VSPEGLRLDGRRPMEMRQ+RA+IGAVSKA+GSAVFEMGNTKV+AAVYGPRE             VRCEYTMANFSTGDRMRKPKGDRRS EISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE-------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
        QTMEECILTHLMPRSQIDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPD                MDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        LPID FENVMQLA+EGCKA+A+YIRE                           ++LENTKQLEY R
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp417.7e-4444.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREV-------------RCEYTMANFSTGDRMRKPKGDRRSIEISLVIR
        ++ +   G R+DGR+  E+R I+ E+G +  A+GSA  E G  KVLAAVYGPRE+             R  Y MA FS  +R +KP  DRRS+EIS VIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREV-------------RCEYTMANFSTGDRMRKPKGDRRSIEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  D                MD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDAK

Query:  LPIDVFENVMQLAIEGCKAVASYIRES
        L  D F   ++LAI+G KAV    RE+
Subjt:  LPIDVFENVMQLAIEGCKAVASYIRES

Q7YRA3 Exosome complex component RRP411.4e-5350.23Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++A+GSA  E GNTK LA VYGP E+R              C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP----------------DMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP                +MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP----------------DMDA

Query:  KLPIDVFENVMQLAIEGCKAV
        +L  D  E V++ A    + V
Subjt:  KLPIDVFENVMQLAIEGCKAV

Q921I9 Exosome complex component RRP416.3e-5449.77Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++A+GSA  E GNTK LA VYGP E+R              C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP----------------DMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP                +MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP----------------DMDA

Query:  KLPIDVFENVMQLAIEGCKAV
        +L  D  E V++ A +  + V
Subjt:  KLPIDVFENVMQLAIEGCKAV

Q9NPD3 Exosome complex component RRP412.2e-5447.9Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++A+GSA  E GNTK LA VYGP E+R              C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP----------------DMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP                +MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP----------------DMDA

Query:  KLPIDVFENVMQLAIEGC--------KAVASYIRESAI
        +L  D  E V++ A +          + V  ++RE++I
Subjt:  KLPIDVFENVMQLAIEGC--------KAVASYIRESAI

Q9SP08 Exosome complex component RRP41 homolog1.0e-8063.67Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE++              CEY+MA FSTGDR R+ K DRRS E+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG D                MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDA

Query:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        KLP++ FE V  LA EGCKA+A  IRE                           V+ ENTKQLEY R
Subjt:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein2.7e-1533.76Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVRCEYTMANFSTGDRMRKPKG---DRRSIEISLVIRQTMEE-CILTHLMPRSQID
        R DGR P ++R +      + + +GSA +  G+TKVLAAVYGP+    +   A  +  + + KPK     +   E  +++++T++  C+LT + P +   
Subjt:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVRCEYTMANFSTGDRMRKPKG---DRRSIEISLVIRQTMEE-CILTHLMPRSQID

Query:  IFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED
        + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+
Subjt:  IFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein2.7e-1533.76Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVRCEYTMANFSTGDRMRKPKG---DRRSIEISLVIRQTMEE-CILTHLMPRSQID
        R DGR P ++R +      + + +GSA +  G+TKVLAAVYGP+    +   A  +  + + KPK     +   E  +++++T++  C+LT + P +   
Subjt:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVRCEYTMANFSTGDRMRKPKG---DRRSIEISLVIRQTMEE-CILTHLMPRSQID

Query:  IFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED
        + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+
Subjt:  IFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED

AT3G61620.1 3'-5'-exoribonuclease family protein7.3e-8263.67Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE++              CEY+MA FSTGDR R+ K DRRS E+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG D                MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDA

Query:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        KLP++ FE V  LA EGCKA+A  IRE                           V+ ENTKQLEY R
Subjt:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

AT3G61620.2 3'-5'-exoribonuclease family protein7.3e-8263.67Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE++              CEY+MA FSTGDR R+ K DRRS E+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVR--------------CEYTMANFSTGDRMRKPKGDRRSIEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG D                MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD----------------MDA

Query:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR
        KLP++ FE V  LA EGCKA+A  IRE                           V+ ENTKQLEY R
Subjt:  KLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAVFRGQVMLENTKQLEYHR

AT4G27490.1 3'-5'-exoribonuclease family protein2.2e-1734.18Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEECILTH
        R DGR   + R    + GAVS A+GSA  E GNTKV+ +V+GPRE            + C  +  NF++    +    D +  E S ++ + +E  I+  
Subjt:  RLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPRE------------VRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEECILTH

Query:  LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLD
          P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D
Subjt:  LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCGTGAGCCCTGAAGGACTTCGCCTGGACGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAAATGGGTCTGCCGT
TTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACCGGAGATCGCATGAGAAAGCCCA
AGGGAGACAGGCGATCCATAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTTACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTT
CTTCAAGCAGATGGAGGTACGAGATCAGCATGCATCAATGCTGCAACTTTGGCACTTGCCGATGCTGGAATTCCCATGCGTGATATTGTTACTTCCTGCAGCGCTGGATA
CCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATATGGATGCTAAATTACCTATTGACGTATTTGAGAATGTGATGCAACTTG
CAATTGAGGGCTGCAAAGCCGTAGCTAGTTACATTCGAGAATCTGCTATTTTCCATTGGAAAACCATATTGCAACTGATGATGGTTGGATTATTCAAATTTTGTGCTGTT
TTTCGTGGACAGGTAATGTTAGAGAATACGAAGCAACTCGAATATCATCGTGATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCGTGAGCCCTGAAGGACTTCGCCTGGACGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCAGAAATTGGCGCCGTTTCTAAAGCAAATGGGTCTGCCGT
TTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCAAGAGAGGTGCGTTGTGAGTACACCATGGCTAATTTCAGTACCGGAGATCGCATGAGAAAGCCCA
AGGGAGACAGGCGATCCATAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTTACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTT
CTTCAAGCAGATGGAGGTACGAGATCAGCATGCATCAATGCTGCAACTTTGGCACTTGCCGATGCTGGAATTCCCATGCGTGATATTGTTACTTCCTGCAGCGCTGGATA
CCTTAATAGCACTCCTCTGCTAGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATATGGATGCTAAATTACCTATTGACGTATTTGAGAATGTGATGCAACTTG
CAATTGAGGGCTGCAAAGCCGTAGCTAGTTACATTCGAGAATCTGCTATTTTCCATTGGAAAACCATATTGCAACTGATGATGGTTGGATTATTCAAATTTTGTGCTGTT
TTTCGTGGACAGGTAATGTTAGAGAATACGAAGCAACTCGAATATCATCGTGATGGATAG
Protein sequenceShow/hide protein sequence
MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVRCEYTMANFSTGDRMRKPKGDRRSIEISLVIRQTMEECILTHLMPRSQIDIFVQV
LQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDMDAKLPIDVFENVMQLAIEGCKAVASYIRESAIFHWKTILQLMMVGLFKFCAV
FRGQVMLENTKQLEYHRDG