; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10015216 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015216
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationChr02:24900586..24901005
RNA-Seq ExpressionHG10015216
SyntenyHG10015216
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034297.1 polygalacturonase [Cucumis melo var. makuwa]6.2e-6794.81Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

TYK15622.1 polygalacturonase [Cucumis melo var. makuwa]6.2e-6794.81Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

XP_008446184.2 PREDICTED: polygalacturonase At1g48100 [Cucumis melo]6.2e-6794.81Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

XP_038891502.1 polygalacturonase At1g48100 isoform X1 [Benincasa hispida]5.1e-6997.04Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKY+CKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESR FQSSLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSIDYCLRRG GAVRRIARSHDHVCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

XP_038891503.1 polygalacturonase At1g48100 isoform X2 [Benincasa hispida]5.1e-6997.04Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKY+CKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESR FQSSLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSIDYCLRRG GAVRRIARSHDHVCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

TrEMBL top hitse value%identityAlignment
A0A0A0KQ72 Uncharacterized protein5.1e-6794.07Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+S+C NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

A0A1S3BEF8 polygalacturonase At1g481003.0e-6794.81Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

A0A5A7SYE1 Polygalacturonase3.0e-6794.81Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

A0A5D3CVS9 Polygalacturonase3.0e-6794.81Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDK +CKNQTGAVAISGITYDQIIGSY+VQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQ+SLC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPLLPTSID CLRRGGGAVRRIARSHD+VCY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

A0A6J1HSE8 polygalacturonase At1g481009.7e-6691.11Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGG+GSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGI YDQIIGSYTVQPIHLACSSQIPC+DVDLI IQL PSS SRGFQS+LC NSY
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY
        GKSQAPL+P+SIDYCLRRG GAVRRIARSHDH CY
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVCY

SwissProt top hitse value%identityAlignment
O23147 Polygalacturonase ADPG12.8e-1439.09Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNS
        QGG G+ KN+ F NI++ +VK PI+IDQ YCDK +C++Q  AV +  + Y  I G S T   I L CS + PC  + L ++++K  + S       C N+
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNS

Query:  YGKSQAPLLP
          K+Q  + P
Subjt:  YGKSQAPLLP

P43212 Polygalacturonase4.1e-1335.07Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYC-DKYRCKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN
        QGG G   ++ + N+++ + + PI+I+Q+YC     C+NQ  AV I  +TY  I G S T   I L CS  +PC D+ L DI LK +S      S L  N
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYC-DKYRCKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN

Query:  SYGKSQAPLLPTSIDYCLRRGGGAVRRIARSHDH
        + G     ++P     C      A R+ ++SH H
Subjt:  SYGKSQAPLLPTSIDYCLRRGGGAVRRIARSHDH

Q7M1E7 Polygalacturonase1.3e-1135.71Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYC-DKYRCKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN
        QGG G    +++ N+++ + + PI+I+Q+YC     C+NQ  AV I G+TY  I G S T   I L CS  +PC  + L ++ LK +S      S +  N
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYC-DKYRCKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN

Query:  SYGKSQAPLLPT
        + G     L+PT
Subjt:  SYGKSQAPLLPT

Q949Z1 Polygalacturonase At1g481001.5e-1840Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ--PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN
        QGG GSV N+ F NIQ+ +V   I++DQYYC    C+N+T AV +  + Y  I G+Y V+  PIH ACS  + C ++ + +++L P  E        C N
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ--PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN

Query:  SYGKSQAPLLPTSIDYCLRRGGGAV
        +YGK +   +P  ID CL  G   V
Subjt:  SYGKSQAPLLPTSIDYCLRRGGGAV

Q94AJ5 Probable polygalacturonase At1g801708.0e-1741.44Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYR-CKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN
        QGG G V  + F NI++++V  PI+IDQYYCD  + C NQT A++I  I++  + G S + + I ++CS   PC ++ L DI L+PS+   GF  S C  
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYR-CKNQTGAVAISGITYDQIIG-SYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN

Query:  SYGKSQAPLLP
        +YG S   + P
Subjt:  SYGKSQAPLLP

Arabidopsis top hitse value%identityAlignment
AT1G10640.1 Pectin lyase-like superfamily protein2.1e-3349.25Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGG+GSVK + FSNIQ++ V++PI I+Q+YCD  +CKNQT AVA+ G+TY++I G+YTV+P+H ACS   PCVDV L  I+LKP  E      + C  ++
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVC
        G+   P LP  ID CL+ G     ++   HD VC
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHDHVC

AT1G56710.1 Pectin lyase-like superfamily protein6.5e-2243.22Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ--PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN
        QGG GSV  + FSNI + +V+ PIMIDQYYC    C NQT AV IS + Y  I G+Y ++  PIH  CS  +PC ++ L ++ L P S+ +  ++  C N
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQ--PIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLN

Query:  SYGKSQAPLLPTSIDYCL
        +YG  +  + P    YCL
Subjt:  SYGKSQAPLLPTSIDYCL

AT1G60590.1 Pectin lyase-like superfamily protein6.5e-3045.8Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGGIGSVK + FSNIQ+++V++PI+IDQ+YCD  +C N T AV++ G+TY++I G+YTV+P+H ACS   PC+DV L  I+LKP           C  ++
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHD
        G+  +  +P  ID CL+ G  A   +   HD
Subjt:  GKSQAPLLPTSIDYCLRRGGGAVRRIARSHD

AT3G26610.1 Pectin lyase-like superfamily protein2.6e-4759.86Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQS-----SL
        QGG+G VKN++FSNIQV DVKVPI+IDQYYCDK +CKNQT AV+ISG+ Y+ I+GS+TVQP+ +ACS+ +PC+DVDL+DI+L+PS   RG Q+     +L
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQS-----SL

Query:  CLNSYGKSQAPLLPTSIDYCLRR---GGGAVRRIARSHDHVC
        C NSYGK+Q PL+P+SI YCLR+   GG   ++++RS+D +C
Subjt:  CLNSYGKSQAPLLPTSIDYCLRR---GGGAVRRIARSHDHVC

AT5G14650.1 Pectin lyase-like superfamily protein3.7e-2548.62Show/hide
Query:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY
        QGG GSVK V FSNIQVS+V  PI+IDQYYCD   C N+T AVA+S I Y  I G+YT +P+  ACS  +PC  + L  I+LKP++         C  ++
Subjt:  QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSY

Query:  GKSQAPLLP
        G+ +   LP
Subjt:  GKSQAPLLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATATGAACAGGGAGGAATTGGGTCAGTGAAGAATGTATCATTCTCAAACATCCAAGTTTCTGATGTAAAGGTTCCCATTATGATAGACCAATACTATTGCGACAA
GTACAGATGCAAGAACCAAACAGGAGCAGTTGCAATTTCAGGTATAACATACGATCAAATCATAGGAAGTTACACTGTACAGCCTATTCATTTAGCCTGTAGCAGCCAAA
TCCCATGCGTAGACGTTGATCTTATTGACATCCAGCTGAAGCCATCTTCAGAATCCAGAGGCTTTCAAAGCTCCCTATGTTTGAATTCTTATGGTAAATCTCAGGCCCCT
CTTCTTCCTACTAGCATAGACTATTGCCTGAGAAGGGGTGGTGGCGCTGTAAGGAGAATTGCAAGGTCCCATGATCATGTCTGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATATGAACAGGGAGGAATTGGGTCAGTGAAGAATGTATCATTCTCAAACATCCAAGTTTCTGATGTAAAGGTTCCCATTATGATAGACCAATACTATTGCGACAA
GTACAGATGCAAGAACCAAACAGGAGCAGTTGCAATTTCAGGTATAACATACGATCAAATCATAGGAAGTTACACTGTACAGCCTATTCATTTAGCCTGTAGCAGCCAAA
TCCCATGCGTAGACGTTGATCTTATTGACATCCAGCTGAAGCCATCTTCAGAATCCAGAGGCTTTCAAAGCTCCCTATGTTTGAATTCTTATGGTAAATCTCAGGCCCCT
CTTCTTCCTACTAGCATAGACTATTGCCTGAGAAGGGGTGGTGGCGCTGTAAGGAGAATTGCAAGGTCCCATGATCATGTCTGCTACTAA
Protein sequenceShow/hide protein sequence
MEYEQGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKYRCKNQTGAVAISGITYDQIIGSYTVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQSSLCLNSYGKSQAP
LLPTSIDYCLRRGGGAVRRIARSHDHVCY