; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10015246 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015246
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionserine/arginine-rich splicing factor RSZ21
Genome locationChr02:25131936..25136535
RNA-Seq ExpressionHG10015246
SyntenyHG10015246
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032266.1 Serine/arginine-rich splicing factor RSZ21, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-4296.67Show/hide
Query:  GSFATMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        GSF TMTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRG
Subjt:  GSFATMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

TYK15593.1 serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa]6.6e-41100Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

XP_008446226.1 PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo]6.6e-41100Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

XP_011655636.1 serine/arginine-rich splicing factor RSZ21 [Cucumis sativus]6.6e-41100Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

XP_038892593.1 serine/arginine-rich splicing factor RSZ21 [Benincasa hispida]6.6e-41100Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

TrEMBL top hitse value%identityAlignment
A0A0A0KTR0 RRM domain-containing protein6.3e-4564.67Show/hide
Query:  MKIYWAQIGKNSSAQYALPSSTTRKPN--SLITRLIPSADFRASELCDYRQRRFPTLSPADLF-----------AVPGSFATMTRVYIGNLDPRVTERDL
        MKIYWAQI +  ++   L  +  R P+  +L  R           L        P     DLF           AV  SF TMTRVYIGNLDPRVTERDL
Subjt:  MKIYWAQIGKNSSAQYALPSSTTRKPN--SLITRLIPSADFRASELCDYRQRRFPTLSPADLF-----------AVPGSFATMTRVYIGNLDPRVTERDL

Query:  EDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        EDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  EDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

A0A1S3BEJ4 serine/arginine-rich splicing factor RSZ213.2e-41100Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

A0A5D3CUM7 Serine/arginine-rich splicing factor RSZ21 isoform X13.2e-41100Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

A0A6J1GX57 serine/arginine-rich splicing factor RSZ21-like9.3e-4198.82Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

A0A6J1KZV2 serine/arginine-rich splicing factor RSZ21-like9.3e-4198.82Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

SwissProt top hitse value%identityAlignment
O81126 Serine/arginine-rich splicing factor RSZ224.1e-3378.16Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN--SKGGGGGGGRRGRG
        M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDGKNGWRVE SHN   +GGGG GG RG G
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN--SKGGGGGGGRRGRG

O81127 Serine/arginine-rich splicing factor RSZ218.7e-3685.71Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG

Q69KL9 Serine/arginine-rich splicing factor RSZ21A5.0e-3175.9Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRG
        M RVY+GNLDPRVT R+LEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +DGKNGWRVELS N+  G GG  R G
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRG

Q6K4N0 Serine/arginine-rich splicing factor RSZ213.5e-2975.32Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGG
        M R+Y+GNLDPRVT  +LEDEFR+FGVLRSVWVAR+PPG+AFI+FDD+RDA DA++ LDGKNGWRVELS NS   GG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGG

Q9SJA6 Serine/arginine-rich splicing factor RSZ22A2.4e-3377.65Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DGKNGWRVE SHN  GGGG GG RG G
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG

Arabidopsis top hitse value%identityAlignment
AT1G23860.1 RS-containing zinc finger protein 216.2e-3785.71Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG

AT1G23860.2 RS-containing zinc finger protein 216.2e-3785.71Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG

AT1G23860.3 RS-containing zinc finger protein 216.2e-3785.71Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG

AT1G23860.4 RS-containing zinc finger protein 216.2e-3785.71Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRG

AT2G24590.1 RNA recognition motif and CCHC-type zinc finger domains containing protein1.7e-3477.65Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG
        M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DGKNGWRVE SHN  GGGG GG RG G
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCTACTGGGCCCAGATTGGTAAGAACAGCTCGGCCCAATATGCCTTGCCTTCATCGACAACAAGAAAACCAAACTCACTCATCACTCGACTGATACCTTCTGC
AGACTTCCGAGCATCGGAGCTCTGCGACTACAGGCAGCGCCGTTTTCCTACCTTATCTCCGGCTGATCTCTTCGCGGTTCCTGGCTCCTTTGCTACAATGACTCGAGTTT
ACATTGGAAATCTGGATCCACGCGTTACAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCA
TTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGG
TGGTGGTCGTCGTGGCCGGGGTGTCCTTCTCCTCGACGCCGTCGGAGTCCAAGCTATGAAAGATATGGGCCGCAGTTTGATGACTCCAATTGGGGATGCCTCCCATCTAT
CTCCATCCTCAGAAGAGGTTGACCCACTTCATTTGCTCAACAAAACCTTTCCTTTATTTGGTGCTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATCTACTGGGCCCAGATTGGTAAGAACAGCTCGGCCCAATATGCCTTGCCTTCATCGACAACAAGAAAACCAAACTCACTCATCACTCGACTGATACCTTCTGC
AGACTTCCGAGCATCGGAGCTCTGCGACTACAGGCAGCGCCGTTTTCCTACCTTATCTCCGGCTGATCTCTTCGCGGTTCCTGGCTCCTTTGCTACAATGACTCGAGTTT
ACATTGGAAATCTGGATCCACGCGTTACAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCA
TTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGG
TGGTGGTCGTCGTGGCCGGGGTGTCCTTCTCCTCGACGCCGTCGGAGTCCAAGCTATGAAAGATATGGGCCGCAGTTTGATGACTCCAATTGGGGATGCCTCCCATCTAT
CTCCATCCTCAGAAGAGGTTGACCCACTTCATTTGCTCAACAAAACCTTTCCTTTATTTGGTGCTACCTGA
Protein sequenceShow/hide protein sequence
MKIYWAQIGKNSSAQYALPSSTTRKPNSLITRLIPSADFRASELCDYRQRRFPTLSPADLFAVPGSFATMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYA
FIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRGVLLLDAVGVQAMKDMGRSLMTPIGDASHLSPSSEEVDPLHLLNKTFPLFGAT