; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10015327 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015327
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiontranscription factor PRE6-like
Genome locationChr02:25823697..25825410
RNA-Seq ExpressionHG10015327
SyntenyHG10015327
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]3.5e-3794.74Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASK+LQETCNYIRSLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]7.8e-3793.68Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASK+LQETCNYIRSLQREVDDLSDRLS+LLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]1.0e-3693.68Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASK+LQETCNYIRSLQREVDDLS+RLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]5.6e-3590.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASK+LQETCNYIRSLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]1.1e-3896.84Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASK+LQETCNYIRSLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator1.7e-3794.74Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASK+LQETCNYIRSLQREVDDLSDRLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like3.8e-3793.68Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASK+LQETCNYIRSLQREVDDLSDRLS+LLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like4.9e-3793.68Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASK+LQETCNYIRSLQREVDDLS+RLSELLA+TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like3.5e-3590.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASK+LQETCNYIRSLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like2.7e-3590.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASK+LQETCNYIRSLQREV DLSDRLSELL +TDPESAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI63.2e-2570.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S++LQETCNYIRSL +EVDDLS+RLSELLAT+D  SAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI63.2e-2570.53Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S++LQETCNYIRSL +EVDDLS+RLSELLAT+D  SAQAAIIRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE63.4e-2776.34Show/hide
Query:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASK+LQETCNYIR+L REVDDLSDRLSELLA+TD  SA+AAIIRSLL
Subjt:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE36.0e-2468.09Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA+++LQ+TCNYIR+L REVDDLS+RLSELLA +D  +AQAA+IRSLL
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE23.5e-2466.67Show/hide
Query:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASK+LQETCNYIR+L +E DDLSDRL++LL + DP S QAA+IRSL+
Subjt:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-2876.34Show/hide
Query:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASK+LQETCNYIR+L REVDDLSDRLSELLA+TD  SA+AAIIRSLL
Subjt:  SARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.3e-2568.09Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA+++LQ+TCNYIR+L REVDDLS+RLSELLA +D  +AQAA+IRSLL
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein8.1e-2465.17Show/hide
Query:  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        RSR++   SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASK+LQETCNYIR L REVD+LSDRLS+LL + D +S +AA+IRSLLM
Subjt:  RSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

AT3G47710.1 BANQUO 36.8e-2361.05Show/hide
Query:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM
        MS+R SRSR++G  +  I+D+QI DL+ +L +L+PE+ N R S +VSAS++LQETC+YIR+L +EVDDLS+RLS+LL +TD  SAQAA+IRSLLM
Subjt:  MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 22.5e-2566.67Show/hide
Query:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASK+LQETCNYIR+L +E DDLSDRL++LL + DP S QAA+IRSL+
Subjt:  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGAT
TCGCAATGGACGTTCCTCCTCCAGGGTATCAGCTTCAAAGATTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTAT
CAGAGCTATTGGCAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGCCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAAATTGCTGATTTGATCTCAAAATTACAGCAGCTCATCCCTGAGAT
TCGCAATGGACGTTCCTCCTCCAGGGTATCAGCTTCAAAGATTCTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGATTTAAGCGATCGACTAT
CAGAGCTATTGGCAACAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGTTTACTTATGTAA
Protein sequenceShow/hide protein sequence
MSARSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKILQETCNYIRSLQREVDDLSDRLSELLATTDPESAQAAIIRSLLM