; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10015414 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015414
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein CRABS CLAW
Genome locationChr02:26451589..26454021
RNA-Seq ExpressionHG10015414
SyntenyHG10015414
Gene Ontology termsGO:0009908 - flower development (biological process)
InterPro domainsIPR006780 - YABBY protein
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013095.1 Protein CRABS CLAW, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-4469.28Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA
        + +SEDKSSMDLVQPSDHLCYVKCNFCNTVLA                                          QSQVGFSNDIRKGASTSSSS+SSSMA
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        NESPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

XP_022944998.1 protein CRABS CLAW [Cucurbita moschata]4.2e-4470.2Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        +SEDKSSMDLVQPSDHLCYVKCNFCNTVLA                                          QSQVGFSNDIRKGASTSSSS+SSSMANE
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        SPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

XP_023542830.1 protein CRABS CLAW [Cucurbita pepo subsp. pepo]2.1e-4369.54Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        +SEDKSSMDLVQPSDHLCYVKCNFCNTVLA                                          QSQVGFS DIRKGASTSSSS+SSSMANE
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        SPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

XP_038893343.1 protein CRABS CLAW isoform X1 [Benincasa hispida]2.1e-4368.42Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMAN
        SNS+DKSSMDLVQPS+HLCYVKCNFCNTVLA                                          QSQVGFSNDIRKGASTSS+STSSS+ N
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMAN

Query:  ESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        ESPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  ESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

XP_038893344.1 protein CRABS CLAW isoform X2 [Benincasa hispida]2.3e-4268Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN--------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANES
        SNS+DKSSMDLVQPS+HLCYVKCNFCNTVLA                                          QVGFSNDIRKGASTSS+STSSS+ NES
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN--------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANES

Query:  PSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        PS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  PSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

TrEMBL top hitse value%identityAlignment
A0A6J1D6X3 protein CRABS CLAW9.5e-4265.36Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA
        MS+ + K+SMDLVQPS+HLCYV+CNFCNTVLA                                          Q+QVGFSNDIRKGASTSS+STSSSMA
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        NESPS +FVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  NESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

A0A6J1FZK6 protein CRABS CLAW2.0e-4470.2Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        +SEDKSSMDLVQPSDHLCYVKCNFCNTVLA                                          QSQVGFSNDIRKGASTSSSS+SSSMANE
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        SPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

A0A6J1HVT7 protein CRABS CLAW2.1e-4166.88Show/hide
Query:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGAST---SSSSTSSSM
        +SEDK+SMDLVQPS+HLCYVKCNFCNTVLA                                          QSQVGFSN+IRKGAST   SSSS+SSSM
Subjt:  NSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN----------------------------------------QSQVGFSNDIRKGAST---SSSSTSSSM

Query:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        ANESPS NFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

A0A6J1ITA5 protein CRABS CLAW-like isoform X24.4e-3962.99Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN-----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSM
        M +SEDKSSMDLVQP+DHLCYVKCNFCNT+LA                                           Q QVGFSND RKGAS SS+S+SSSM
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN-----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSM

Query:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
         NE PS +FVVKPPEKKHRLPSAYN FMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

A0A6J1IU64 protein CRABS CLAW-like isoform X14.4e-3962.99Show/hide
Query:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN-----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSM
        M +SEDKSSMDLVQP+DHLCYVKCNFCNT+LA                                           Q QVGFSND RKGAS SS+S+SSSM
Subjt:  MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN-----------------------------------------QSQVGFSNDIRKGASTSSSSTSSSM

Query:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
         NE PS +FVVKPPEKKHRLPSAYN FMKEEIQRIKAANPEIPHREAFSAAAKN
Subjt:  ANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

SwissProt top hitse value%identityAlignment
O22152 Axial regulator YABBY 14.1e-1838.6Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA
        S S    S D   PSDHLCYV+CNFC T+LA N                                    Q Q+G        DI +    + S+ +  M 
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        N+ P++N                   V +PPEK+ R+PSAYNRF+KEEIQRIKA NP+I HREAFSAAAKN
Subjt:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

Q76EJ0 Protein DROOPING LEAF5.6e-2348.59Show/hide
Query:  MDLVQPSDHLCYVKCNFCNTVLAYN----------QSQVGFSNDIR----------------------KGASTSSSSTS-----SSMANE-SPSLNFVVK
        MDLV PS+HLCYV+C +CNTVLA              + G  N++                       +G  T           S  +NE SP   FVVK
Subjt:  MDLVQPSDHLCYVKCNFCNTVLAYN----------QSQVGFSNDIR----------------------KGASTSSSSTS-----SSMANE-SPSLNFVVK

Query:  PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        PPEKKHRLPSAYNRFM+EEIQRIKAA P+IPHREAFS AAKN
Subjt:  PPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

Q7XIM7 Protein YABBY 15.6e-1540.28Show/hide
Query:  SDHLCYVKCNFCNTVLAYN-----------------------------------QSQV---GF--SNDIRKGASTSSSSTSSSMANESPSLNFV--VKPP
        S+H+CYV CN+CNT+L  N                                     QV   GF  +N      ++ +  TS++M     S   V  ++PP
Subjt:  SDHLCYVKCNFCNTVLAYN-----------------------------------QSQV---GF--SNDIRKGASTSSSSTSSSMANESPSLNFV--VKPP

Query:  EKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNVINL
        EK+ R+PSAYNRF+KEEIQRIK +NPEI HREAFSAAAKN  +L
Subjt:  EKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNVINL

Q8L925 Protein CRABS CLAW1.7e-2447.68Show/hide
Query:  NSEDKSSMDLVQPS---DHLCYVKCNFCNTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        N E+K +M   + S   +HL YV+C+ CNT+LA                                       Q Q    +D +KG+S+SSSS++SS    
Subjt:  NSEDKSSMDLVQPS---DHLCYVKCNFCNTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        SPS  FVVKPPEKK RLPSAYNRFM++EIQRIK+ANPEIPHREAFSAAAKN
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

Q9XFB0 Putative axial regulator YABBY 21.6e-1438.89Show/hide
Query:  SDHLCYVKCNFCNTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV
        S+ +CYV C+FC T+LA                               +  S      D+            RK  ++SS ST   S ++  E+P +   
Subjt:  SDHLCYVKCNFCNTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV

Query:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        ++PPEK+ R+PSAYNRF+KEEIQRIKA NPEI HREAFS AAKN
Subjt:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein1.2e-1538.89Show/hide
Query:  SDHLCYVKCNFCNTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV
        S+ +CYV C+FC T+LA                               +  S      D+            RK  ++SS ST   S ++  E+P +   
Subjt:  SDHLCYVKCNFCNTVLA-------------------------------YNQSQVGFSNDI------------RKGASTSSSST---SSSMANESPSLNFV

Query:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        ++PPEK+ R+PSAYNRF+KEEIQRIKA NPEI HREAFS AAKN
Subjt:  VKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

AT1G69180.1 Plant-specific transcription factor YABBY family protein1.2e-2547.68Show/hide
Query:  NSEDKSSMDLVQPS---DHLCYVKCNFCNTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE
        N E+K +M   + S   +HL YV+C+ CNT+LA                                       Q Q    +D +KG+S+SSSS++SS    
Subjt:  NSEDKSSMDLVQPS---DHLCYVKCNFCNTVLAYN-------------------------------------QSQVGFSNDIRKGASTSSSSTSSSMANE

Query:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        SPS  FVVKPPEKK RLPSAYNRFM++EIQRIK+ANPEIPHREAFSAAAKN
Subjt:  SPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

AT2G26580.1 plant-specific transcription factor YABBY family protein1.5e-1539.86Show/hide
Query:  VQPSDHLCYVKCNFCNTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK
        V  ++ LCY+ CNFCN +LA N   S +     +R G  T+  S + + A +S S       N+ V                             +PPEK
Subjt:  VQPSDHLCYVKCNFCNTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK

Query:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        + R+PSAYN+F+KEEIQRIKA NP+I HREAFS AAKN
Subjt:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

AT2G26580.2 plant-specific transcription factor YABBY family protein1.5e-1539.86Show/hide
Query:  VQPSDHLCYVKCNFCNTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK
        V  ++ LCY+ CNFCN +LA N   S +     +R G  T+  S + + A +S S       N+ V                             +PPEK
Subjt:  VQPSDHLCYVKCNFCNTVLAYNQ--SQVGFSNDIRKGASTSSSSTSSSMANESPS------LNFVV-----------------------------KPPEK

Query:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        + R+PSAYN+F+KEEIQRIKA NP+I HREAFS AAKN
Subjt:  KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN

AT2G45190.1 Plant-specific transcription factor YABBY family protein2.9e-1938.6Show/hide
Query:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA
        S S    S D   PSDHLCYV+CNFC T+LA N                                    Q Q+G        DI +    + S+ +  M 
Subjt:  SNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYN------------------------------------QSQVG-----FSNDIRKGASTSSSSTSSSMA

Query:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN
        N+ P++N                   V +PPEK+ R+PSAYNRF+KEEIQRIKA NP+I HREAFSAAAKN
Subjt:  NESPSLNF------------------VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACTCTGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGCAACACTGTTCTTGCGTACAACCAGTCTCA
GGTTGGGTTCTCCAATGATATTCGAAAGGGTGCATCCACATCGTCGAGTTCCACGTCCTCTTCAATGGCAAATGAGTCCCCTTCTCTAAATTTTGTTGTTAAACCCCCTG
AGAAGAAACATAGACTGCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCA
GCAAAAAACGTAATCAACCTTTTTTATTTCCCTTCTTTTTTAATTTCTGTATTCTTTTCTTATATTTCCAAGTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAACTCTGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGCAACACTGTTCTTGCGTACAACCAGTCTCA
GGTTGGGTTCTCCAATGATATTCGAAAGGGTGCATCCACATCGTCGAGTTCCACGTCCTCTTCAATGGCAAATGAGTCCCCTTCTCTAAATTTTGTTGTTAAACCCCCTG
AGAAGAAACATAGACTGCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCA
GCAAAAAACGTAATCAACCTTTTTTATTTCCCTTCTTTTTTAATTTCTGTATTCTTTTCTTATATTTCCAAGTCAAATTAA
Protein sequenceShow/hide protein sequence
MSNSEDKSSMDLVQPSDHLCYVKCNFCNTVLAYNQSQVGFSNDIRKGASTSSSSTSSSMANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAA
AKNVINLFYFPSFLISVFFSYISKSN