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HG10015487 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015487
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationChr02:27073142..27073817
RNA-Seq ExpressionHG10015487
SyntenyHG10015487
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EPS74534.1 hypothetical protein M569_00251, partial [Genlisea aurea]1.6e-1285.71Show/hide
Query:  PEKESIDSLPIGWTVGAMIYFTGEVSGSSPGWPSYAKEKNKR
        P KES+DS PIGWTVGAMIYFTGEVSGSSPGWPS A+EKN+R
Subjt:  PEKESIDSLPIGWTVGAMIYFTGEVSGSSPGWPSYAKEKNKR
KAD4981694.1 hypothetical protein E3N88_18365 [Mikania micrantha]2.0e-1297.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
KAG0447283.1 hypothetical protein HPP92_028386 [Vanilla planifolia]9.1e-2186.67Show/hide
Query:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG
        MIYFTGEVSGSSPGWPS A+++ KRIEEA DSFM A LGSGGYSSVGRAPLLQLGRCDYG
Subjt:  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG
KAG6773797.1 hypothetical protein POTOM_021122 [Populus tomentosa]2.8e-1470.15Show/hide
Query:  TVGAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        T+ AMIYFTGEV GSS GWPS AKE  K+I  A D F+ +PLGSGGY SVGRA LLQL  CDY LDV
Subjt:  TVGAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
KAG6790056.1 hypothetical protein POTOM_006202 [Populus tomentosa]3.3e-1575Show/hide
Query:  AMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        AMI+FT +V  SS GWPS AKEKN RI+EASDSF+ APL S GYS VGRA  LQLGRCDYGLDV
Subjt:  AMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
TrEMBL top hitse value%identityAlignment
A0A166G702 Uncharacterized protein9.8e-1397.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
A0A5N6NLK6 Uncharacterized protein9.8e-1397.5Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
A0A6N2KFV3 Uncharacterized protein ycf682.9e-1295Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
A0A6N2M157 Uncharacterized protein ycf682.9e-1295Show/hide
Query:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
S8D475 Uncharacterized protein (Fragment)7.5e-1385.71Show/hide
Query:  PEKESIDSLPIGWTVGAMIYFTGEVSGSSPGWPSYAKEKNKR
        P KES+DS PIGWTVGAMIYFTGEVSGSSPGWPS A+EKN+R
Subjt:  PEKESIDSLPIGWTVGAMIYFTGEVSGSSPGWPSYAKEKNKR
SwissProt top hitse value%identityAlignment
A6MMB2 DNA-directed RNA polymerase subunit beta''4.1e-0889.66Show/hide
Query:  DLLQERDNLELRVVNYILYGNGKPIRGIA
        DLLQERDN++LRVVNYILYGNGKPIRGI+
Subjt:  DLLQERDNLELRVVNYILYGNGKPIRGIA
A6MMT4 DNA-directed RNA polymerase subunit beta''5.4e-0889.66Show/hide
Query:  DLLQERDNLELRVVNYILYGNGKPIRGIA
        DLLQERDNL+LRVVNY LYGNGKPIRGI+
Subjt:  DLLQERDNLELRVVNYILYGNGKPIRGIA
A7Y3B4 DNA-directed RNA polymerase subunit beta''4.1e-0889.66Show/hide
Query:  DLLQERDNLELRVVNYILYGNGKPIRGIA
        DLLQERDN++LRVVNYILYGNGKPIRGI+
Subjt:  DLLQERDNLELRVVNYILYGNGKPIRGIA
Q3V544 DNA-directed RNA polymerase subunit beta''4.1e-0889.66Show/hide
Query:  DLLQERDNLELRVVNYILYGNGKPIRGIA
        DLLQERDN++LRVVNYILYGNGKPIRGI+
Subjt:  DLLQERDNLELRVVNYILYGNGKPIRGIA
Q4VZP3 DNA-directed RNA polymerase subunit beta''2.4e-0893.1Show/hide
Query:  DLLQERDNLELRVVNYILYGNGKPIRGIA
        DLLQERDNLELRV NYILYGNGKPIRGI+
Subjt:  DLLQERDNLELRVVNYILYGNGKPIRGIA
Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein6.1e-0772.41Show/hide
Query:  DLLQERDNLELRVVNYILYGNGKPIRGIA
        DL +E+DN++LRV NYILYGNGKP RGI+
Subjt:  DLLQERDNLELRVVNYILYGNGKPIRGIA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATCGCTCCCGAAAAGGAATCTATTGA
TTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAG
AAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATCGCTCCCGAAAAGGAATCTATTGA
TTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAG
AAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTC
TAA
Protein sequenceShow/hide protein sequence
MDLLQERDNLELRVVNYILYGNGKPIRGIAPEKESIDSLPIGWTVGAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV