; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10015527 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015527
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionVQ motif-containing protein 8
Genome locationChr02:27422322..27422759
RNA-Seq ExpressionHG10015527
SyntenyHG10015527
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-2654.36Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRK----PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQ
        MSPPK   I+GPRP PLL+H+ SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALVQRLTG +PP      + +N+SSS +T E+ N         
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRK----PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQ

Query:  SQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
                             L TP S   L+NSLSPSFMEFLK LPEF
Subjt:  SQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]8.6e-2773.2Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPP----------PNAADNESSSGLTTEEE
        MSPPKS EINGPRPSPLLIH  SR IRKP QLRQP+IIYTHSPKIIHT PKDFMALVQRLTG  PPPP P           N  DN+SSSG+TTEE+
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPP----------PNAADNESSSGLTTEEE

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]2.0e-4468.49Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQK
        MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGF PPPP P  N+ DN+S+SG+T+EE+             
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQK

Query:  QSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
          V ++QSN S+ +YSSD+TTPFSSPA ++SLSPSFM+FLKALPEF
Subjt:  QSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]4.5e-3662.65Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAA--------DNESSSGLTTEEENEWG
        MSP KSC+INGPRPSPLLIH+ SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPP  + +        DN+SSS LT  EE   G
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAA--------DNESSSGLTTEEENEWG

Query:  DRKQSQSQ-KQSVVQRQSNSSLH----------RYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
        D     S  K+   Q QS+S L           RY+ D T+ F+SP L NSLSPSFMEFLK LPEF
Subjt:  DRKQSQSQ-KQSVVQRQSNSSLH----------RYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]8.5e-5983.44Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAA-----------DNESSSGLTTEEE-NE
        MSPPKSCEINGPRPSPLLIH+DSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGF PPPPPPP+ A           DN+SSSGLTTEEE NE
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAA-----------DNESSSGLTTEEE-NE

Query:  WGDRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
         GD+KQS   KQ +VQRQSNSSL RYSSD+TTPFSSPALINSLSPSFMEFLKALPEF
Subjt:  WGDRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein1.6e-3965.19Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPP----------PNAADNESSSGLTTEEENEW
        MSPPKS EINGPRPSPLLIH  SR IRKP QLRQP+IIYTHSPKIIHT PKDFMALVQRLTG  PPPP P           N  DN+SSSG+TTEE+   
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRKP-QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPP----------PNAADNESSSGLTTEEENEW

Query:  GDRKQSQSQKQSVVQRQSNSSLHRYSS-DLTTPFSSPA-LINSLSPSFMEFLKALPEF
                    + ++QSN S+ +YSS D+TTPFSSPA L +SLSPSFM+FLKALPEF
Subjt:  GDRKQSQSQKQSVVQRQSNSSLHRYSS-DLTTPFSSPA-LINSLSPSFMEFLKALPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like9.8e-4568.49Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQK
        MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGF PPPP P  N+ DN+S+SG+T+EE+             
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQK

Query:  QSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
          V ++QSN S+ +YSSD+TTPFSSPA ++SLSPSFM+FLKALPEF
Subjt:  QSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

A0A5D3CFH5 VQ motif-containing protein 89.8e-4568.49Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQK
        MSPPKS +ING RPSPLLIH DSR +RKPQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGF PPPP P  N+ DN+S+SG+T+EE+             
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPP-NAADNESSSGLTTEEENEWGDRKQSQSQK

Query:  QSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
          V ++QSN S+ +YSSD+TTPFSSPA ++SLSPSFM+FLKALPEF
Subjt:  QSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic2.2e-3662.65Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAA--------DNESSSGLTTEEENEWG
        MSP KSC+INGPRPSPLLIH+ SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPP  + +        DN+SSS LT  EE   G
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAA--------DNESSSGLTTEEENEWG

Query:  DRKQSQSQ-KQSVVQRQSNSSLH----------RYSSDLTTPFSSPALINSLSPSFMEFLKALPEF
        D     S  K+   Q QS+S L           RY+ D T+ F+SP L NSLSPSFMEFLK LPEF
Subjt:  DRKQSQSQ-KQSVVQRQSNSSLH----------RYSSDLTTPFSSPALINSLSPSFMEFLKALPEF

A0A6P6V8N0 VQ motif-containing protein 8, chloroplastic-like1.3e-1740.31Show/hide
Query:  INGPRPSPLLIHRDSRFIRKP---------------------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNA-------------AD
        INGPRPSPL I++DS  I+KP                     Q RQPVIIYTHSPKIIHT+PKDFMALVQ+LTGF+        A              D
Subjt:  INGPRPSPLLIHRDSRFIRKP---------------------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNA-------------AD

Query:  NESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSSD--LTTP------------------FSSPALINSLSPSFMEFLKALPEF
        N+SSS   T ++   GD      ++ S      N  L+ Y +D  L TP                  F+SP +++SLSPSF+EF+K LPE+
Subjt:  NESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSSLHRYSSD--LTTP------------------FSSPALINSLSPSFMEFLKALPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B3.0e-0636.11Show/hide
Query:  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSS
        P+S    GP+P+PL +  DS + I+KP L                         PV IYT +P+IIHT P +FM LVQRLTG T        +  + SSS
Subjt:  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSS

Query:  GLTTEEEN
          T+E ++
Subjt:  GLTTEEEN

Q8LGD5 Protein MKS16.4e-0941.33Show/hide
Query:  KSCEINGPRPSPLLIHRDSRFIRKPQL----------------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +  +I GPRPSPL +H+DS  I+KP                  R+PV+IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCEINGPRPSPLLIHRDSRFIRKPQL----------------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q9CA36 VQ motif-containing protein 8, chloroplastic1.1e-1138.82Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRK---------PQLR-QPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWG
        M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT+ +DFMALVQRLTG             +ESSS + TEE N  G
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRK---------PQLR-QPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWG

Query:  DRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKAL
        D   +    Q   QRQ  + +  ++    T F SP  +  +SP+  +  + L
Subjt:  DRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKAL

Q9LS54 VQ motif-containing protein 208.9e-1154.84Show/hide
Query:  PRPSPLLIHRDSRFIRKP----------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        P P  L +++DS  I+KP          + R PVIIYTH+P+IIHT PKDFMALVQ+LTG T
Subjt:  PRPSPLLIHRDSRFIRKP----------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.1e-0736.11Show/hide
Query:  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSS
        P+S    GP+P+PL +  DS + I+KP L                         PV IYT +P+IIHT P +FM LVQRLTG T        +  + SSS
Subjt:  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSS

Query:  GLTTEEEN
          T+E ++
Subjt:  GLTTEEEN

AT1G21326.1 VQ motif-containing protein2.3e-0945.24Show/hide
Query:  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        P+S  I GPRP PL +  DS + I+KP L                         PVIIYT SP+IIHT P +FM LVQRLTG T
Subjt:  PKSCEINGPRPSPLLIHRDS-RFIRKPQLRQ-----------------------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT

AT1G68450.1 VQ motif-containing protein7.5e-1338.82Show/hide
Query:  MSPPKSCEINGPRPSPLLIHRDSRFIRK---------PQLR-QPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWG
        M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT+ +DFMALVQRLTG             +ESSS + TEE N  G
Subjt:  MSPPKSCEINGPRPSPLLIHRDSRFIRK---------PQLR-QPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWG

Query:  DRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKAL
        D   +    Q   QRQ  + +  ++    T F SP  +  +SP+  +  + L
Subjt:  DRKQSQSQKQSVVQRQSNSSLHRYSSDLTTPFSSPALINSLSPSFMEFLKAL

AT3G18360.1 VQ motif-containing protein6.3e-1254.84Show/hide
Query:  PRPSPLLIHRDSRFIRKP----------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        P P  L +++DS  I+KP          + R PVIIYTH+P+IIHT PKDFMALVQ+LTG T
Subjt:  PRPSPLLIHRDSRFIRKP----------QLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT

AT3G18690.1 MAP kinase substrate 14.5e-1041.33Show/hide
Query:  KSCEINGPRPSPLLIHRDSRFIRKPQL----------------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +  +I GPRPSPL +H+DS  I+KP                  R+PV+IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCEINGPRPSPLLIHRDSRFIRKPQL----------------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAGAGATTCTCGTTTCATTCGCAAGCCTCAGCTCCGGCAGCCCGTCATCAT
TTACACCCATTCCCCCAAAATCATCCACACCCAGCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCACCCCCGCCGCCGCCTAACGCCGCCG
ACAATGAATCTTCGTCGGGTCTGACGACGGAGGAGGAGAATGAATGGGGAGATCGGAAACAGAGTCAGAGTCAGAAACAGAGTGTAGTGCAGAGGCAGAGTAATTCTTCT
CTTCACAGATATTCTTCTGATCTTACGACGCCGTTTTCTTCCCCTGCTTTGATTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAGAGATTCTCGTTTCATTCGCAAGCCTCAGCTCCGGCAGCCCGTCATCAT
TTACACCCATTCCCCCAAAATCATCCACACCCAGCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCACCCCCGCCGCCGCCTAACGCCGCCG
ACAATGAATCTTCGTCGGGTCTGACGACGGAGGAGGAGAATGAATGGGGAGATCGGAAACAGAGTCAGAGTCAGAAACAGAGTGTAGTGCAGAGGCAGAGTAATTCTTCT
CTTCACAGATATTCTTCTGATCTTACGACGCCGTTTTCTTCCCCTGCTTTGATTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA
Protein sequenceShow/hide protein sequence
MSPPKSCEINGPRPSPLLIHRDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPPPNAADNESSSGLTTEEENEWGDRKQSQSQKQSVVQRQSNSS
LHRYSSDLTTPFSSPALINSLSPSFMEFLKALPEF