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HG10015612 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015612
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationChr02:28114632..28117229
RNA-Seq ExpressionHG10015612
SyntenyHG10015612
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]7.9e-3689.66Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA
        MD SNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NKIINVEHWTDFG TF A
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA

KAG7032018.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3590.59Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD SNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NKIINVEHWTDFG TF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]1.3e-3590.59Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]6.0e-3689.66Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA
        MD SNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NKIINVEHWTDFGTTF A
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]3.5e-3692.94Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+ GLPTVPLMNFVEVVGIAE NKIINVEHWTDFGTTF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein1.6e-3489.41Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGTTF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

A0A1S3BGM8 replication protein A 14 kDa subunit B-like6.5e-3690.59Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

A0A5A7SU42 Replication protein A 14 kDa subunit B-like6.5e-3690.59Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFGTTF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

A0A6J1D9X1 replication protein A 14 kDa subunit B-like1.3e-3181.61Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA
        MD SNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LTVHGLP VPLMNFVEV+GIAE NKIINVEH TDFG TF A
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA

A0A6J1JC99 replication protein A 14 kDa subunit B-like3.2e-3588.51Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA
        MD SNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LTVHGLPTVPLMNFVEVVGIAE NKIINVEHWTDFGT F A
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVA

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.7e-2055.29Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD S+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+Q++ V G P  PL  ++EV+GIAE +  I  E WT+FG +F
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

Q9LXK1 Replication protein A 14 kDa subunit A1.1e-1650Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD S+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ ++ V G  P  PL  ++EV+GIAE +  I  E WT+FG TF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

Q9SDK9 Replication protein A 14 kDa subunit2.6e-1849.41Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD S PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  +LT+ G    P+ ++VE++GIAE N+ I  E  TDFG  F
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein7.9e-1850Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD S+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ ++ V G  P  PL  ++EV+GIAE +  I  E WT+FG TF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein7.9e-1850Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD S+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ ++ V G  P  PL  ++EV+GIAE +  I  E WT+FG TF
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.2e-2155.29Show/hide
Query:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF
        MD S+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+Q++ V G P  PL  ++EV+GIAE +  I  E WT+FG +F
Subjt:  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAAGATTCGAGCAGTAGTTCAAGTTATCCAAAGTGATGGTGGAATCGT
TACAGGAAAATCTACGGATGAACAAAAATTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGAATTGCTGAGGACAACAAGATCATCA
ATGTTGAACATTGGACCGACTTTGGAACCACTTTTGTCGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCA
GGCGACGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAAGATTCGAGCAGTAGTTCAAGTTATCCAAAGTGATGGTGGAATCGT
TACAGGAAAATCTACGGATGAACAAAAATTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGAATTGCTGAGGACAACAAGATCATCA
ATGTTGAACATTGGACCGACTTTGGAACCACTTTTGTCGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCA
GGCGACGGTTGA
Protein sequenceShow/hide protein sequence
MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVALAEWLRRVPAKYMGFPRESSNLS
GDG