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HG10015736 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015736
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationChr02:29490037..29490393
RNA-Seq ExpressionHG10015736
SyntenyHG10015736
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144014.1 uncharacterized protein LOC111013803 [Momordica charantia]2.3e-3057.52Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH
        C EFDY+KIPCSHA+    +RNI+PY LC  AYT + W+ +YAEPIFPV H S W + P F +  V PP+ V  VGRR+T RIPS GE+ +Q  KCSRC 
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH

Query:  NIGHNRKTCRAQL
          GHNRKTC   L
Subjt:  NIGHNRKTCRAQL

XP_022145141.1 uncharacterized protein LOC111014656 [Momordica charantia]3.0e-3060.36Show/hide
Query:  EFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCHNI
        EFDY+K+PCSHA+A    R+I+PY LC  AYTV+ W+ +YAEPIFPV  SS WK+ PGF +  V PP+ V  VGRR+TVRIPS GE++    KCSRC   
Subjt:  EFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCHNI

Query:  GHNRKTCRAQL
        GHNRKTCR  L
Subjt:  GHNRKTCRAQL

XP_022151004.1 uncharacterized protein LOC111019024 [Momordica charantia]2.1e-3157.39Show/hide
Query:  MCGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRC
        +C EFDY+KIPCSHA+AA  +RNI+PY LC  AYT + W+ +YAEPIFPV H S W + P F +  V PP+ V  VGRR+T RIPS GE+ +Q  KC RC
Subjt:  MCGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRC

Query:  HNIGHNRKTCRAQLV
           GHNRKTC   L+
Subjt:  HNIGHNRKTCRAQLV

XP_022153146.1 uncharacterized protein LOC111020715 [Momordica charantia]2.3e-3058.41Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH
        C EFDY+KIPCSHA+A   +RNI+PY LC  AYT + WV +YAEPIFP+ H S W + P F D  V  P +V  VGRRRTVRIPS GE+ +Q  KC RC 
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH

Query:  NIGHNRKTCRAQL
          GHN KTC   L
Subjt:  NIGHNRKTCRAQL

XP_022159268.1 uncharacterized protein LOC111025678 [Momordica charantia]2.7e-3159.29Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH
        C EFDY+KIPCSHA+AA  +RNI+PY LC  AYT + W+ +YAEPIFPV H S W + P F +  V PP+ V  VGRR+TVRIPS GE+ +Q  KC RC 
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH

Query:  NIGHNRKTCRAQL
          GHNRKTC   L
Subjt:  NIGHNRKTCRAQL

TrEMBL top hitse value%identityAlignment
A0A6J1CR19 uncharacterized protein LOC1110138031.1e-3057.52Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH
        C EFDY+KIPCSHA+    +RNI+PY LC  AYT + W+ +YAEPIFPV H S W + P F +  V PP+ V  VGRR+T RIPS GE+ +Q  KCSRC 
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH

Query:  NIGHNRKTCRAQL
          GHNRKTC   L
Subjt:  NIGHNRKTCRAQL

A0A6J1CVG8 uncharacterized protein LOC1110146561.5e-3060.36Show/hide
Query:  EFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCHNI
        EFDY+K+PCSHA+A    R+I+PY LC  AYTV+ W+ +YAEPIFPV  SS WK+ PGF +  V PP+ V  VGRR+TVRIPS GE++    KCSRC   
Subjt:  EFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCHNI

Query:  GHNRKTCRAQL
        GHNRKTCR  L
Subjt:  GHNRKTCRAQL

A0A6J1DBQ5 uncharacterized protein LOC1110190241.0e-3157.39Show/hide
Query:  MCGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRC
        +C EFDY+KIPCSHA+AA  +RNI+PY LC  AYT + W+ +YAEPIFPV H S W + P F +  V PP+ V  VGRR+T RIPS GE+ +Q  KC RC
Subjt:  MCGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRC

Query:  HNIGHNRKTCRAQLV
           GHNRKTC   L+
Subjt:  HNIGHNRKTCRAQLV

A0A6J1DJT1 uncharacterized protein LOC1110207151.1e-3058.41Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH
        C EFDY+KIPCSHA+A   +RNI+PY LC  AYT + WV +YAEPIFP+ H S W + P F D  V  P +V  VGRRRTVRIPS GE+ +Q  KC RC 
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH

Query:  NIGHNRKTCRAQL
          GHN KTC   L
Subjt:  NIGHNRKTCRAQL

A0A6J1DYC4 uncharacterized protein LOC1110256781.3e-3159.29Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH
        C EFDY+KIPCSHA+AA  +RNI+PY LC  AYT + W+ +YAEPIFPV H S W + P F +  V PP+ V  VGRR+TVRIPS GE+ +Q  KC RC 
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCH

Query:  NIGHNRKTCRAQL
          GHNRKTC   L
Subjt:  NIGHNRKTCRAQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64255.1 MuDR family transposase9.4e-0635.21Show/hide
Query:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRL--VLPP
        CG+F  YK PC HALA C+    +P       YT+     +YA     V   S W    G    L  V+PP
Subjt:  CGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRL--VLPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGAGAGTTTGATTACTATAAGATCCCATGTTCGCATGCTCTTGCCGCTTGTCGAGTTAGGAATATTGATCCATATGGGTTATGCTCTAGTGCATATACAGTTTC
GCCCTGGGTGGCTAGTTACGCTGAGCCCATATTCCCTGTATGTCATTCATCAAAGTGGAAGACACCACCTGGATTCGAGGATAGATTAGTCTTACCCCCAAGGGTTGTTG
GAACTGTTGGTCGTCGTAGAACTGTAAGAATCCCTTCGAACGGTGAACTCCAGAAACAAATTCACAAGTGTTCTCGGTGTCACAACATTGGGCACAATCGAAAGACATGT
CGAGCTCAGCTTGTAGATAATACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGAGAGTTTGATTACTATAAGATCCCATGTTCGCATGCTCTTGCCGCTTGTCGAGTTAGGAATATTGATCCATATGGGTTATGCTCTAGTGCATATACAGTTTC
GCCCTGGGTGGCTAGTTACGCTGAGCCCATATTCCCTGTATGTCATTCATCAAAGTGGAAGACACCACCTGGATTCGAGGATAGATTAGTCTTACCCCCAAGGGTTGTTG
GAACTGTTGGTCGTCGTAGAACTGTAAGAATCCCTTCGAACGGTGAACTCCAGAAACAAATTCACAAGTGTTCTCGGTGTCACAACATTGGGCACAATCGAAAGACATGT
CGAGCTCAGCTTGTAGATAATACTTAG
Protein sequenceShow/hide protein sequence
MCGEFDYYKIPCSHALAACRVRNIDPYGLCSSAYTVSPWVASYAEPIFPVCHSSKWKTPPGFEDRLVLPPRVVGTVGRRRTVRIPSNGELQKQIHKCSRCHNIGHNRKTC
RAQLVDNT