CuGenDBv2

Gene ID	HG10015751
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Chr02:29730002..29730607
RNA-Seq Expression	HG10015751
Synteny	HG10015751
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

3.6e-40

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

KAG2271714.1 hypothetical protein Bca52824_066269 [Brassica carinata]

4.2e-41

56.83

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH-----------------------------------------------SGKPYILKLIHQVDDKIHGRS
        MVFNPLGVPSRMNVGQIF           D H                                                GKPYILKLIHQVDDKIHGRS
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH-----------------------------------------------SGKPYILKLIHQVDDKIHGRS

Query:  SGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        SGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+
Subjt:  SGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

OMP07120.1 hypothetical protein CCACVL1_01372 [Corchorus capsularis]

1.0e-42

53.2

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRDYDLW
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+   W
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRDYDLW

Query:  LWN
        LWN
Subjt:  LWN

QZQ53433.1 RNA polymerase beta subunit [Acer fabri]

1.6e-40

50.25

Show/hide

Query:  MVFNPLGVPSRMNVGQIFDAH-----------------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF+                                                                          GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIFDAH-----------------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRDYDLW
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED P  F     +YDLW
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRDYDLW

Query:  LWN
        LWN
Subjt:  LWN

YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]

3.6e-40

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

TrEMBL top hits

e value

%identity

Alignment

A0A1R3KJ63 DNA-directed RNA polymerase

4.9e-43

53.2

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRDYDLW
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+   W
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRDYDLW

Query:  LWN
        LWN
Subjt:  LWN

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

1.7e-40

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

1.7e-40

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

A0A218KG28 DNA-directed RNA polymerase subunit beta

1.7e-40

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

A0A249RZI0 DNA-directed RNA polymerase subunit beta

1.7e-40

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

SwissProt top hits

e value

%identity

Alignment

A4QJA7 DNA-directed RNA polymerase subunit beta

1.8e-42

53.06

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

A4QK10 DNA-directed RNA polymerase subunit beta

1.8e-42

53.06

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

A4QK97 DNA-directed RNA polymerase subunit beta

1.8e-42

53.06

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

P50546 DNA-directed RNA polymerase subunit beta

1.8e-42

53.06

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

Q4VZP1 DNA-directed RNA polymerase subunit beta

4.7e-43

53.57

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

1.3e-43

53.06

Show/hide

Query:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK
        MVFNPLGVPSRMNVGQIF           D H                                                             GKPYILK
Subjt:  MVFNPLGVPSRMNVGQIF-----------DAH------------------------------------------------------------SGKPYILK

Query:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD
        LIHQVDDKIHGRSSGHYALVTQQPLRGR  +     G   + +   FGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVR+
Subjt:  LIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGS-RRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGATGCTCACTCGGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAA
AATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGCCAAGCAAGGTGGACAACGGGTGGGGAAATGGAGGTTTGGGCTCTAGAA
GATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCTAAA
CCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGATTACGATCTTTGGCTTTGGAACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVFNPLGVPSRMNVGQIFDAHSGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRPSKVDNGWGNGGLGSRRFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPK
PEDTPESFRLLVRDYDLWLWN

HG10015751 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome