CuGenDBv2

Gene ID	HG10015752
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	Chr02:29732376..29732561
RNA-Seq Expression	HG10015752
Synteny	HG10015752
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF4357689.1 hypothetical protein F8388_007225 [Cannabis sativa]

2.0e-17

80.33

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL
        MCQEKLVQEAVDTLLDN IRGQPMRDGHNKVYKSFSDVIEGKE  F    L+N  II+ VL
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL

KAF8762070.1 hypothetical protein HU200_009832 [Digitaria exilis]

2.8e-19

81.97

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL
        MCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS SDVIEGKE  F RLCL NGSI + VL
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL

KAF9604875.1 hypothetical protein IFM89_011157 [Coptis chinensis]

3.7e-16

80.7

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSII
        MCQEKLVQEAVDT LDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F    L  G  I
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSII

KAG6570304.1 DNA-directed RNA polymerase subunit beta', partial [Cucurbita argyrosperma subsp. sororia]

3.5e-22

91.94

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF-GRLCLANGSIIQDVL
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F  +LCLANGSIIQDVL
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF-GRLCLANGSIIQDVL

TYJ10256.1 hypothetical protein E1A91_A11G195200v1 [Gossypium mustelinum]

1.3e-16

97.83

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEE F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

TrEMBL top hits

e value

%identity

Alignment

A0A0K1ZDL3 DNA-directed RNA polymerase subunit gamma

1.8e-16

88.24

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCL
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F +  L
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCL

A0A5D2X8Q4 DNA-directed RNA polymerase subunit

6.2e-17

97.83

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEE F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

A0A6H0EVH6 DNA-directed RNA polymerase subunit beta'

1.8e-16

88.24

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCL
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F +  L
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCL

A0A7J6FCE1 DNA-directed RNA polymerase subunit

9.6e-18

80.33

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL
        MCQEKLVQEAVDTLLDN IRGQPMRDGHNKVYKSFSDVIEGKE  F    L+N  II+ VL
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL

A0A803MTG5 Uncharacterized protein

1.8e-16

76.19

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF------GRLCLANGSII
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F       R+  + GS+I
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF------GRLCLANGSII

SwissProt top hits

e value

%identity

Alignment

A4QJA6 DNA-directed RNA polymerase subunit beta'

1.1e-18

95.65

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

A9LYH6 DNA-directed RNA polymerase subunit beta'

1.1e-18

95.65

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

P60287 DNA-directed RNA polymerase subunit beta'

1.1e-18

95.65

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

Q3V543 DNA-directed RNA polymerase subunit beta'

1.1e-18

95.65

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

Q5QA71 DNA-directed RNA polymerase subunit beta'

1.1e-18

95.65

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

7.7e-20

95.65

Show/hide

Query:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF
        MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE  F
Subjt:  MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGA
TGTAATTGAAGGCAAAGAGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGA

mRNA sequence

Show/hide mRNA sequence

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGA
TGTAATTGAAGGCAAAGAGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGA

Protein sequence

Show/hide protein sequence

MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEEDFGRLCLANGSIIQDVL

HG10015752 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome