CuGenDBv2

Gene ID	HG10015755
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S2, chloroplastic
Genome location	Chr02:29741507..29742137
RNA-Seq Expression	HG10015755
Synteny	HG10015755
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009536 - plastid (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001865 - Ribosomal protein S2 IPR005706 - Ribosomal protein S2, bacteria/mitochondria/plastid IPR018130 - Ribosomal protein S2, conserved site IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88761.1 ribosomal protein S2, partial [Lagenaria siceraria]

3.1e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

QJS52344.1 ribosomal protein S2 [Indofevillea khasiana]

3.1e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

YP_009674380.1 ribosomal protein S2 [Siraitia grosvenorii]

3.1e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

YP_009751474.1 ribosomal protein S2 [Thladiantha dubia]

3.1e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

YP_009752064.1 ribosomal protein S2 [Dendrosicyos socotranus]

3.1e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE54 Ribosomal protein S2

1.5e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

A0A2Z2CQF0 30S ribosomal protein S2, chloroplastic

1.5e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

A0A6H0ER73 30S ribosomal protein S2, chloroplastic

1.5e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

X2F5D2 30S ribosomal protein S2, chloroplastic

1.5e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

X2F6M8 Ribosomal protein S2 (Fragment)

1.5e-58

63.96

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

SwissProt top hits

e value

%identity

Alignment

B2LMI3 30S ribosomal protein S2, chloroplastic

4.2e-58

61.42

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNP+MAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EEY  LQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

Q0G9N0 30S ribosomal protein S2, chloroplastic

3.2e-58

61.42

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLR EQKTG LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+EC+TLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

Q0ZJ31 30S ribosomal protein S2, chloroplastic

3.2e-58

61.93

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTG LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+ECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

Q1KXW9 30S ribosomal protein S2, chloroplastic

4.2e-58

61.42

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNP+MAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGL+RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EEY ALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

Q4VZP4 30S ribosomal protein S2, chloroplastic

1.2e-60

63.45

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   ETRLHKFRDLRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

3.2e-53

56.85

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------
        MT+RYWNI LEEMM AGVHFGHGTRKWNPRMAPYISAKRK                                                            
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------------------------------------------

Query:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP
                   E RLHKFRDLRTEQKT G NRLPKRDAA+LKRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY AL+ECITLGIPTI LIDTNC+P
Subjt:  -----------ETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDP

Sequences

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CDS sequence

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ATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATC
TCTGCAAAACGTAAAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTG
AAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATACCGGGCT
CTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAG

mRNA sequence

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Protein sequence

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MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRA
LQECITLGIPTICLIDTNCDPISQIFRFQRMMML

HG10015755 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome