CuGenDBv2

Gene ID	HG10015757
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	Chr02:29745530..29745784
RNA-Seq Expression	HG10015757
Synteny	HG10015757
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

OMP13909.1 hypothetical protein COLO4_00652 [Corchorus olitorius]

2.0e-28

76.83

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Query:  IPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLPLLVGVHLGSADYVMDEVLLTGTWSNWEK
        +PERIFIQTLIGRVLADDIYMGPRCI IRNQDIG+GL++RF+TF+  QYLF  PLLVGVHLG  DYVM  V L  TW NWEK
Subjt:  IPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLPLLVGVHLGSADYVMDEVLLTGTWSNWEK

QSQ72300.1 RNA polymerase beta'' subunit [Benincasa hispida]

1.2e-17

87.27

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT       P
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

YP_009751980.1 RNA polymerase beta'' subunit [Cionosicys macranthus]

1.6e-17

100

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT

YP_009752065.1 RNA polymerase beta'' subunit [Dendrosicyos socotranus]

1.2e-17

87.27

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT       P
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

YP_010131084.1 RNA polymerase beta'' subunit [Benincasa hispida]

1.2e-17

87.27

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT       P
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LFL6 DNA-directed RNA polymerase

7.7e-18

100

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT

A0A1R3L3P6 DNA-directed RNA polymerase

9.7e-29

76.83

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Query:  IPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLPLLVGVHLGSADYVMDEVLLTGTWSNWEK
        +PERIFIQTLIGRVLADDIYMGPRCI IRNQDIG+GL++RF+TF+  QYLF  PLLVGVHLG  DYVM  V L  TW NWEK
Subjt:  IPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLPLLVGVHLGSADYVMDEVLLTGTWSNWEK

A0A346QNZ0 DNA-directed RNA polymerase subunit beta''

7.7e-18

100

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT

A0A6H0EUF2 DNA-directed RNA polymerase subunit beta''

5.9e-18

87.27

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT       P
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

A0A7T3QNJ7 RNA polymerase beta'' subunit

5.9e-18

87.27

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT       P
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

SwissProt top hits

e value

%identity

Alignment

B1A925 DNA-directed RNA polymerase subunit beta''

2.0e-18

79.63

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Query:  IPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        +PERIFIQTLIGRVLADDIYMGPRCI IRNQDIGIGL+NRFITF+T       P
Subjt:  IPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

Q0ZJ30 DNA-directed RNA polymerase subunit beta''

5.2e-19

95.65

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQ
        MIPERIFIQTLIGRVLADDIYMGPRCI IRNQDIGIGL+NRFITFQ
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQ

Q3C1G9 DNA-directed RNA polymerase subunit beta''

1.3e-17

89.13

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQ
        M+PERIFIQTLIGRVLADDIYMGPRCI  RNQDIGIGL+NRFITF+
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQ

Q49L08 DNA-directed RNA polymerase subunit beta''

8.8e-19

91.49

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
        M+PERIFIQTLIGRVLADDIYMGPRCI IRNQDIGIGL+NRFITF+T
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT

Q4VZP3 DNA-directed RNA polymerase subunit beta''

2.7e-20

97.87

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT
        MIPERIFIQTLIGRVLADDIYMGPRCIG+RNQDIGIGLINRFITFQT
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

7.2e-16

67.27

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Query:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP
        M+ ERIFIQTLIGRVLADDIY+G RC+  RNQD+GIGL+NR ITF T       P
Subjt:  MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLP

Sequences

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CDS sequence

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ATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGG
ACTTATCAATCGATTCATAACCTTTCAAACACACCAATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTAC
TCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAG

mRNA sequence

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Protein sequence

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MIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTHQYLFGLPLLVGVHLGSADYVMDEVLLTGTWSNWEKP

HG10015757 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome