CuGenDBv2

Gene ID	HG10015758
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	Chr02:29746289..29746615
RNA-Seq Expression	HG10015758
Synteny	HG10015758
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0032549 - ribonucleoside binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR042102 - RNA polymerase Rpb1, domain 3 superfamily IPR007066 - RNA polymerase Rpb1, domain 3

Homology

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GenBank top hits

e value

%identity

Alignment

KAF8376852.1 hypothetical protein HHK36_031436 [Tetracentron sinense]

3.1e-42

87.85

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Query:  NFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSI
        N  LSGSTR I PEFLR+SRSRKGS  I DSN LSNPTQRNMEVLMAERADLVFHNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS+
Subjt:  NFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSI

Query:  SLGIDDL
        SLGIDDL
Subjt:  SLGIDDL

QJS52311.1 RNA polymerase beta'' subunit [Indofevillea khasiana]

1.2e-49

97.22

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF +IDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

QWQ50133.1 RNA polymerase beta'' subunit [Cyclanthera pedata]

9.1e-50

97.22

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRT+GPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]

7.0e-50

98.15

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

YP_010131084.1 RNA polymerase beta'' subunit [Benincasa hispida]

3.1e-50

99.07

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        M FVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

TrEMBL top hits

e value

%identity

Alignment

A0A346QNZ0 DNA-directed RNA polymerase subunit beta''

3.4e-50

98.15

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF IIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

A0A4D6NNC8 Multifunctional fusion protein

9.9e-42

89.42

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Query:  LSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        + GS RTI PEFL ESRSRKGSF IIDSN LSNPTQRN EVLMAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLG
Subjt:  LSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IDDL
        IDDL
Subjt:  IDDL

A0A6M4SPN7 DNA-directed RNA polymerase subunit beta''

5.8e-50

97.22

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF +IDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

A0A7J7M9Q4 DNA-directed RNA polymerase subunit

1.3e-41

87.74

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Query:  FVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        FVL  ST  I PEFL ESRSRKGS  I DSNLLSNPT RNMEVLMAERADLVFHNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Subjt:  FVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

Query:  LGIDDL
        LGIDDL
Subjt:  LGIDDL

A0A7T3QNJ7 RNA polymerase beta'' subunit

1.5e-50

99.07

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        M FVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIDDL
        ISLGIDDL
Subjt:  ISLGIDDL

SwissProt top hits

e value

%identity

Alignment

A6MM26 DNA-directed RNA polymerase subunit beta''

7.1e-29

96.97

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Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
        MEVLMAERADLVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDL
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL

A8SE78 DNA-directed RNA polymerase subunit beta''

2.1e-28

95.45

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Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
        MEVLMAERADLVFHNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDL
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL

Q06H07 DNA-directed RNA polymerase subunit beta''

1.2e-28

95.45

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Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
        MEVLMAERADLVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KT+GFQQATATSISLGIDDL
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL

Q4VZP3 DNA-directed RNA polymerase subunit beta''

1.4e-29

100

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Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
        MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL

Q9THV5 DNA-directed RNA polymerase subunit beta''

1.2e-28

96.97

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Query:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
        MEVLMAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDL
Subjt:  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.0e-27

96.77

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Query:  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL
        MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDL
Subjt:  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDL

Sequences

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CDS sequence

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ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTATTG
TCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGC
AGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATT
GATGATCTTTAA

mRNA sequence

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Protein sequence

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MNFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI
DDL

HG10015758 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome