| GenBank top hits | e value | %identity | Alignment |
|---|
| AHM88912.1 RNA polymerase beta [Lagenaria siceraria] | 6.2e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| AHM88970.1 RNA polymerase beta [Lagenaria siceraria] | 6.2e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| AHM91152.1 RNA polymerase beta, partial [Lagenaria siceraria] | 6.2e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| ASY96794.1 RNA polymerase beta' subunit [Cucumis melo var. momordica] | 6.2e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| YP_009560826.1 RpoC1 [Trichosanthes kirilowii] | 6.2e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1P8LE65 DNA-directed RNA polymerase subunit gamma | 3.0e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| A0A1X9Q1T5 DNA-directed RNA polymerase subunit beta' | 3.0e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| A0A218KG20 DNA-directed RNA polymerase subunit beta' | 3.0e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| A0A249RZJ2 DNA-directed RNA polymerase subunit beta' | 3.0e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| A0A6M3S6B8 DNA-directed RNA polymerase subunit beta' | 3.0e-69 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A6MM27 DNA-directed RNA polymerase subunit beta' | 1.2e-70 | 97.78 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| A9LYH6 DNA-directed RNA polymerase subunit beta' | 1.5e-70 | 96.3 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIG+AKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| Q3V543 DNA-directed RNA polymerase subunit beta' | 1.5e-70 | 96.3 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIG+AKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| Q4VZP2 DNA-directed RNA polymerase subunit beta' | 8.2e-72 | 99.26 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| Q8HVY4 DNA-directed RNA polymerase subunit beta' | 3.1e-71 | 97.78 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR+HFASNIG+AKSKIREKE IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G63020.1 nuclear RNA polymerase D1A | 4.1e-10 | 28.18 | Show/hide |
Query: HQSNWDAPDLTCG-------LLG-------RSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIREKETIVW-------
+Q D P L CG LLG R+V+V PSL L+ G+P IA L + + ++ ++ + + +R + +V
Subjt: HQSNWDAPDLTCG-------LLG-------RSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIREKETIVW-------
Query: ---EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFL
+I + +M G VL+NR P++H+ + A IL + L+P+ C F DFDGD + +VP S++A+ E L+ L
Subjt: ---EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFL
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| AT1G63020.2 nuclear RNA polymerase D1A | 4.1e-10 | 28.18 | Show/hide |
Query: HQSNWDAPDLTCG-------LLG-------RSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIREKETIVW-------
+Q D P L CG LLG R+V+V PSL L+ G+P IA L + + ++ ++ + + +R + +V
Subjt: HQSNWDAPDLTCG-------LLG-------RSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIREKETIVW-------
Query: ---EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFL
+I + +M G VL+NR P++H+ + A IL + L+P+ C F DFDGD + +VP S++A+ E L+ L
Subjt: ---EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFL
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| AT5G60040.1 nuclear RNA polymerase C1 | 1.3e-11 | 36.26 | Show/hide |
Query: IGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLM
+G + +I ++ I + + + +G VL NR P+LHR+ I + ++ R + + VC +NADFDGD+M +HVP + EA+ EA LM
Subjt: IGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLM
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| AT5G60040.2 nuclear RNA polymerase C1 | 1.3e-11 | 36.26 | Show/hide |
Query: IGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLM
+G + +I ++ I + + + +G VL NR P+LHR+ I + ++ R + + VC +NADFDGD+M +HVP + EA+ EA LM
Subjt: IGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLM
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| ATCG00180.1 DNA-directed RNA polymerase family protein | 3.5e-70 | 94.81 | Show/hide |
Query: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+ IVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLH
Subjt: GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKETIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH
Query: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
Subjt: PLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF
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