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HG10015806 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015806
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRRM domain-containing protein
Genome locationChr03:433318..435274
RNA-Seq ExpressionHG10015806
SyntenyHG10015806
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0046656 - folic acid biosynthetic process (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0008696 - 4-amino-4-deoxychorismate lyase activity (molecular function)
GO:0017069 - snRNA binding (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052443.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]2.3e-1197.37Show/hide
Query:  MAVLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        MAVLLAKDR TKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  MAVLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]2.5e-1097.22Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKDR TKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
XP_038883014.1 UBP1-associated proteins 1B isoform X1 [Benincasa hispida]1.5e-1097.22Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKD+LTKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
XP_038883015.1 glycine-rich RNA-binding protein GRP2A isoform X2 [Benincasa hispida]1.5e-1097.22Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKD+LTKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
XP_038883016.1 organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]1.5e-1097.22Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKD+LTKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein6.0e-1094.44Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKDR TKRPKGYAFIQYTCQDDAMLALE MDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial1.2e-1097.22Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKDR TKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
A0A5A7U963 Glycine-rich RNA-binding protein 41.1e-1197.37Show/hide
Query:  MAVLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        MAVLLAKDR TKRPKGYAFIQYTCQDDAMLALENMDCK
Subjt:  MAVLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
A0A6J1EGU7 small RNA-binding protein 11, chloroplastic1.7e-0994.44Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKDRLTK PKGYAFIQYT QDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
A0A6J1IJY1 small RNA-binding protein 11, chloroplastic1.7e-0994.44Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
        VLLAKDRLTK PKGYAFIQYT QDDAMLALENMDCK
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.0e-0667.65Show/hide
Query:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMD
        V L KD   KR KGYAFIQ+T QDDA LA+E MD
Subjt:  VLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTGTTATTAGCAAAAGATCGGCTAACAAAAAGACCAAAAGGTTATGCATTTATTCAATACACTTGCCAAGACGATGCCATGCTTGCACTGGAAAATATGGATTG
CAAGACCAAGTGCACAAACAACAGCGCAAACAATCGCAACCACGATGACAATGAGGTTGAAGTTGCCACCTTGTTCTTGGTCGCAAGCATCCGGGATAGATACGCTTGGC
GATGGATTAAGGGAAGGAGAAGACGAAGGCTCCATGAACGAAGAACCGAGCATTTTTCGCAAGATGAAATGGTTGAGAAGGAAGCAGCATATAAACATAAATATGAAACA
AGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTGTTATTAGCAAAAGATCGGCTAACAAAAAGACCAAAAGGTTATGCATTTATTCAATACACTTGCCAAGACGATGCCATGCTTGCACTGGAAAATATGGATTG
CAAGACCAAGTGCACAAACAACAGCGCAAACAATCGCAACCACGATGACAATGAGGTTGAAGTTGCCACCTTGTTCTTGGTCGCAAGCATCCGGGATAGATACGCTTGGC
GATGGATTAAGGGAAGGAGAAGACGAAGGCTCCATGAACGAAGAACCGAGCATTTTTCGCAAGATGAAATGGTTGAGAAGGAAGCAGCATATAAACATAAATATGAAACA
AGTTGA
Protein sequenceShow/hide protein sequence
MAVLLAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKTKCTNNSANNRNHDDNEVEVATLFLVASIRDRYAWRWIKGRRRRRLHERRTEHFSQDEMVEKEAAYKHKYET
S