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HG10015811 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015811
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosome biogenesis protein
Genome locationChr03:467730..468446
RNA-Seq ExpressionHG10015811
SyntenyHG10015811
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]1.6e-2972.17Show/hide
Query:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK
        K   R KR+LKAFDLS LSE LPGLEA++QK SAA+ LK+NCKSRLKFILKE KQM  VL+   FQADPL ++QL+LE TQP EE K+KK N NGSKKRK
Subjt:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK

Query:  EEKLKASARPSPMEM
        E+KLKASARPS MEM
Subjt:  EEKLKASARPSPMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]7.9e-2970.43Show/hide
Query:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK
        K   R KR+LKAFDLS LSE LPGLEA++QK SAA+ LK+NCKSRLKFILKE KQM  VL+   FQADPL ++QL+LE TQP+EE K+KK N NGSKKRK
Subjt:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK

Query:  EEKLKASARPSPMEM
        E+K KASA+PS MEM
Subjt:  EEKLKASARPSPMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]7.9e-2969.83Show/hide
Query:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR
        KKKL R KR+LKAFDL+ALSE LPGL+A +QK+S  + LKVNCKSRLKF+LKE KQM  VL+   FQADPLG+I L+L++TQPVEE K+KK N NGSKKR
Subjt:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR

Query:  KEEKLKASARPSPMEM
        KE+K KA+A+PS MEM
Subjt:  KEEKLKASARPSPMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]6.1e-2970.69Show/hide
Query:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR
        KKKL R KR+LKAFDL+ALSE LPGL+A +QK+S  + LKVNCKSRLKF+LKE KQM  VL+   FQADPLG+I L+LE+TQPVEE K+KK N NGSKKR
Subjt:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR

Query:  KEEKLKASARPSPMEM
        KE+K KA+A+PS MEM
Subjt:  KEEKLKASARPSPMEM

XP_038881620.1 uncharacterized protein LOC120073082 [Benincasa hispida]3.0e-3683.62Show/hide
Query:  KKKLRS-KRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR
        +KKLR  KR+LKAFDLSALSESLPGLEASEQKSSAAK LKV+CKSRLKFIL+E KQ+VRVLS  KF ADPLGSIQ +LET QP+EELK KKRNINGSKKR
Subjt:  KKKLRS-KRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR

Query:  KEEKLKASARPSPMEM
        KEEK KASARPS MEM
Subjt:  KEEKLKASARPSPMEM

TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein3.8e-2970.43Show/hide
Query:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK
        K   R KR+LKAFDLS LSE LPGLEA++QK SAA+ LK+NCKSRLKFILKE KQM  VL+   FQADPL ++QL+LE TQP+EE K+KK N NGSKKRK
Subjt:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK

Query:  EEKLKASARPSPMEM
        E+K KASA+PS MEM
Subjt:  EEKLKASARPSPMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like1.5e-2870.43Show/hide
Query:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK
        K   R KR+LKAFDLS LSE LPGLEA++QK SAA+ LK+NCKSRLKFILKE KQM  VL+   FQADPL ++QL+LE TQP+EE K+KK N NGSKKRK
Subjt:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK

Query:  EEKLKASARPSPMEM
        E+K KA ARPS MEM
Subjt:  EEKLKASARPSPMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like7.7e-3072.17Show/hide
Query:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK
        K   R KR+LKAFDLS LSE LPGLEA++QK SAA+ LK+NCKSRLKFILKE KQM  VL+   FQADPL ++QL+LE TQP EE K+KK N NGSKKRK
Subjt:  KKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRK

Query:  EEKLKASARPSPMEM
        E+KLKASARPS MEM
Subjt:  EEKLKASARPSPMEM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like3.8e-2969.83Show/hide
Query:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR
        KKKL R KR+LKAFDL+ALSE LPGL+A +QK+S  + LKVNCKSRLKF+LKE KQM  VL+   FQADPLG+I L+L++TQPVEE K+KK N NGSKKR
Subjt:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR

Query:  KEEKLKASARPSPMEM
        KE+K KA+A+PS MEM
Subjt:  KEEKLKASARPSPMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like5.0e-2969.83Show/hide
Query:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR
        KKKL R KR+LKAFDL+ALSE LPGL+  +QK+S  + LKVNCKSRLKF+LKE KQM  VL+   FQADPLG+I L+LE+TQPVEE K+KK N NGSKKR
Subjt:  KKKL-RSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKR

Query:  KEEKLKASARPSPMEM
        KE+K KA+A+PS MEM
Subjt:  KEEKLKASARPSPMEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein6.3e-1648.18Show/hide
Query:  KKKLRSK-RELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQ-PVEELKRKKRNINGSKK
        KKK+RS+ ++LKA+DL+ LSE LP   A ++ +  A  LK+NCK R K +L E +++ +VL    FQADP+GSI  +L + Q PVEE  +KK N NGSKK
Subjt:  KKKLRSK-RELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQ-PVEELKRKKRNINGSKK

Query:  RKEEKLKASA
        R ++K K  +
Subjt:  RKEEKLKASA

AT2G01640.2 unknown protein6.3e-1648.18Show/hide
Query:  KKKLRSK-RELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQ-PVEELKRKKRNINGSKK
        KKK+RS+ ++LKA+DL+ LSE LP   A ++ +  A  LK+NCK R K +L E +++ +VL    FQADP+GSI  +L + Q PVEE  +KK N NGSKK
Subjt:  KKKLRSK-RELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQ-PVEELKRKKRNINGSKK

Query:  RKEEKLKASA
        R ++K K  +
Subjt:  RKEEKLKASA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAAAACTTCGAAGTAAGAGGGAGTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTCTTCCTGGATTGGAGGCTTCTGAACAAAAATCTTCTGCAGCCAA
GTCGTTGAAAGTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGTCAATCTAAATTCCAGGCAGACCCCTTGGGATCTA
TTCAACTATATTTAGAGACCACACAACCAGTCGAGGAACTGAAGAGAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAAAAGTTGAAAGCCTCTGCAAGA
CCTTCACCTATGGAGATGTGCCTGATCTCTCACCACTCTTCTCAGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAAAACTTCGAAGTAAGAGGGAGTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTCTTCCTGGATTGGAGGCTTCTGAACAAAAATCTTCTGCAGCCAA
GTCGTTGAAAGTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGTCAATCTAAATTCCAGGCAGACCCCTTGGGATCTA
TTCAACTATATTTAGAGACCACACAACCAGTCGAGGAACTGAAGAGAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAAAAGTTGAAAGCCTCTGCAAGA
CCTTCACCTATGGAGATGTGCCTGATCTCTCACCACTCTTCTCAGTTGTAG
Protein sequenceShow/hide protein sequence
MKKKLRSKRELKAFDLSALSESLPGLEASEQKSSAAKSLKVNCKSRLKFILKELKQMVRVLSQSKFQADPLGSIQLYLETTQPVEELKRKKRNINGSKKRKEEKLKASAR
PSPMEMCLISHHSSQL