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HG10015862 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015862
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-damage-repair/toleration protein DRT111, chloroplastic
Genome locationChr03:837429..837752
RNA-Seq ExpressionHG10015862
SyntenyHG10015862
Gene Ontology termsGO:0043484 - regulation of RNA splicing (biological process)
GO:0045292 - mRNA cis splicing, via spliceosome (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR040052 - Splicing factor 45


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052494.1 DNA-damage-repair/toleration protein DRT111 [Cucumis melo var. makuwa]1.7e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_004134609.1 DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus]1.7e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_008439555.1 PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis melo]1.7e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_022146691.1 DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]1.7e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_038882071.1 DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]3.8e-4898.98Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDE+RFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

TrEMBL top hitse value%identityAlignment
A0A0A0KP45 Uncharacterized protein8.3e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A1S3AYL8 DNA-damage-repair/toleration protein DRT111, chloroplastic8.3e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A5A7UAU7 DNA-damage-repair/toleration protein DRT1118.3e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A6J1D044 DNA-damage-repair/toleration protein DRT111, chloroplastic8.3e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A6J1KSL4 DNA-damage-repair/toleration protein DRT111, chloroplastic-like2.4e-4898.98Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

SwissProt top hitse value%identityAlignment
P42698 DNA-damage-repair/toleration protein DRT111, chloroplastic2.4e-4587.63Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF
        VGPG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF

Q2HJG2 Poly(U)-binding-splicing factor PUF607.5e-1544.94Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        V P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  + ET KA+ DL+GR+F GR V A  YD+ERF  ++L+
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Q3UEB3 Poly(U)-binding-splicing factor PUF607.5e-1544.94Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        V P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  + ET KA+  L+GR+FGGR V A  YD+ERF  ++L+
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Q8JZX4 Splicing factor 452.4e-2159.09Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        VG GEVD++LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+VDL+GRYFGGRVV+A FY+ ++F   +LA
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Q96I25 Splicing factor 452.4e-2159.09Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        VG GEVD++LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+VDL+GRYFGGRVV+A FY+ ++F   +LA
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Arabidopsis top hitse value%identityAlignment
AT1G30480.1 D111/G-patch domain-containing protein1.7e-4687.63Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF
        VGPG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF

AT2G16940.1 Splicing factor, CC1-like4.2e-0523.86Show/hide
Query:  LFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF
        +FD S     + D++++E+V  EC+K+G +  + + +        +    ++++FE ++    A   L GR+F G+++ AT+   E +
Subjt:  LFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF

AT2G16940.3 Splicing factor, CC1-like4.2e-0523.86Show/hide
Query:  LFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF
        +FD S     + D++++E+V  EC+K+G +  + + +        +    ++++FE ++    A   L GR+F G+++ AT+   E +
Subjt:  LFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF

AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor2.9e-0628.21Show/hide
Query:  ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
        ++ E++  E  K+G +T V+I   +    PV    ++F+++  ++ +T+A   ++GR FGG  V A +Y E++F + +
Subjt:  ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE

AT4G36690.4 U2 snRNP auxilliary factor, large subunit, splicing factor2.9e-0628.21Show/hide
Query:  ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
        ++ E++  E  K+G +T V+I   +    PV    ++F+++  ++ +T+A   ++GR FGG  V A +Y E++F + +
Subjt:  ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTTGTTTGATTTTTCGAAGGTGGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGGACAGTAACACGGGTTCT
GATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACGAAGGCTTTGGTTGATCTTGATGGTC
GATACTTCGGTGGAAGAGTGGTTCGAGCTACATTTTACGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCTTGTTTGATTTTTCGAAGGTGGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGGACAGTAACACGGGTTCT
GATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACGAAGGCTTTGGTTGATCTTGATGGTC
GATACTTCGGTGGAAGAGTGGTTCGAGCTACATTTTACGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA
Protein sequenceShow/hide protein sequence
MAALFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT