; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10015979 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10015979
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr03:1896519..1901670
RNA-Seq ExpressionHG10015979
SyntenyHG10015979
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647725.1 hypothetical protein Csa_003800 [Cucumis sativus]2.8e-13162.91Show/hide
Query:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS
        MR+STEALVKALLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNT+ FP ALAWKSVIRCYTSH LPHQS+ SFIGMLAS
Subjt:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS

Query:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEA
        GLYPDHNVFPSVLKSCALLMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL+ESGRQRLG  EVFDEMTER +SVR+ SVLVGNEGRK      
Subjt:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEA

Query:  QVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENVVD
                                                                                                         VVD
Subjt:  QVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENVVD

Query:  CAGPFA-----------------RLPSLLRRVYCNSRANMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENE
        CAGPFA                    S LR  +  S     ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENE
Subjt:  CAGPFA-----------------RLPSLLRRVYCNSRANMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENE

Query:  SIGRERYNFMQKMLLPCGLPPEREDD
        SIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  SIGRERYNFMQKMLLPCGLPPEREDD

XP_008439708.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo]2.2e-13682.9Show/hide
Query:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL
        +STEALV +LLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNTL FP ALAWKSVIRCYTSH LPH+S+ SFIGMLASGL
Subjt:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL

Query:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------
        YPDHNVFPSVLK+CA+LMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL++SGRQRLG  +V DEMTER +SVR+ASVLVGN+GRKVS      
Subjt:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------

Query:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS
                E EAQVL+IDYK R+ YREMEACNLGQQIKDISHS S DSVRKIFEMMPEKDLVSWNTIIAGNARNGLY ETLTMVREMG ANLKPDSFTLS
Subjt:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS

Query:  SVLPLIAENV
        SVLPLIAENV
Subjt:  SVLPLIAENV

XP_011658262.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus]2.7e-14285.58Show/hide
Query:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS
        MR+STEALVKALLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNT+ FP ALAWKSVIRCYTSH LPHQS+ SFIGMLAS
Subjt:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS

Query:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----
        GLYPDHNVFPSVLKSCALLMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL+ESGRQRLG  EVFDEMTER +SVR+ SVLVGNEGRKVS    
Subjt:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----

Query:  ----------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT
                  E EAQVL+IDYK RN YRE+EACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL M+REMG ANLKPDSFT
Subjt:  ----------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT

Query:  LSSVLPLIAENV
        LSSVLPLIAENV
Subjt:  LSSVLPLIAENV

XP_022978655.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima]4.1e-12778.71Show/hide
Query:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS
        MR+STEALVKALL+NP++IKSRS AQQLHAQVLKFQ SSLSNLSLVLSLYSHINLL DSLRLFNTL FP  LAWKS+IRCYTSH LPHQS+ASFIGMLAS
Subjt:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS

Query:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----
        GLYPDHNVFPSVLKSCALLMDL LGESVHG+I+RVGLDFDLYTGNALMNMYSKL+FLQESGRQRLGT EVFDEMTER  + R++S LVG+ G        
Subjt:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----

Query:  -------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSK---SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT
               E E  +++ D K    +R++EA NLG QIKDISHSK   SED+VRKIFEMMPE+DLVSWNTIIAGNARNGLYEETLTMVR MGDANLKPDSFT
Subjt:  -------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSK---SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT

Query:  LSSVLPLIAE
        LSSVLPL+AE
Subjt:  LSSVLPLIAE

XP_038891906.1 putative pentatricopeptide repeat-containing protein At3g23330 [Benincasa hispida]2.5e-14084.29Show/hide
Query:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS
        MR++TEALVKALLRNPTSIKSRS AQQLHAQVLKFQ SSLSNLSLVLSLYSHINLLHDS+RLFNTLQFP ALAWKS+IRCYTSH LPHQS+ SFIGMLAS
Subjt:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS

Query:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSE---
        GLYPDHNVFPSVLKSCALL+DLNLGESVHG+II+VGL+FDLYTGNALMNMYSKL FLQESGRQRLGT EVFDEMT+R +SVR+ASVLVGNEGRKVS+   
Subjt:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSE---

Query:  -----------LEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT
                    EAQVL+IDYK RN Y E+EACNL QQI+ ISHSKSEDSVRKIFEMMPE+D+VSWNT+IAGNARNGLYEETLTMVREMGDANLKPDSFT
Subjt:  -----------LEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT

Query:  LSSVLPLIAENV
        LSS+LPLIAE V
Subjt:  LSSVLPLIAENV

TrEMBL top hitse value%identityAlignment
A0A0A0KHY2 DYW_deaminase domain-containing protein1.3e-14285.58Show/hide
Query:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS
        MR+STEALVKALLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNT+ FP ALAWKSVIRCYTSH LPHQS+ SFIGMLAS
Subjt:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS

Query:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----
        GLYPDHNVFPSVLKSCALLMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL+ESGRQRLG  EVFDEMTER +SVR+ SVLVGNEGRKVS    
Subjt:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----

Query:  ----------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT
                  E EAQVL+IDYK RN YRE+EACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL M+REMG ANLKPDSFT
Subjt:  ----------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT

Query:  LSSVLPLIAENV
        LSSVLPLIAENV
Subjt:  LSSVLPLIAENV

A0A1S3AYZ6 putative pentatricopeptide repeat-containing protein At3g233301.1e-13682.9Show/hide
Query:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL
        +STEALV +LLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNTL FP ALAWKSVIRCYTSH LPH+S+ SFIGMLASGL
Subjt:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL

Query:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------
        YPDHNVFPSVLK+CA+LMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL++SGRQRLG  +V DEMTER +SVR+ASVLVGN+GRKVS      
Subjt:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------

Query:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS
                E EAQVL+IDYK R+ YREMEACNLGQQIKDISHS S DSVRKIFEMMPEKDLVSWNTIIAGNARNGLY ETLTMVREMG ANLKPDSFTLS
Subjt:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS

Query:  SVLPLIAENV
        SVLPLIAENV
Subjt:  SVLPLIAENV

A0A5D3CSN4 Putative pentatricopeptide repeat-containing protein1.1e-13682.9Show/hide
Query:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL
        +STEALV +LLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNTL FP ALAWKSVIRCYTSH LPH+S+ SFIGMLASGL
Subjt:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL

Query:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------
        YPDHNVFPSVLK+CA+LMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL++SGRQRLG  +V DEMTER +SVR+ASVLVGN+GRKVS      
Subjt:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------

Query:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS
                E EAQVL+IDYK R+ YREMEACNLGQQIKDISHS S DSVRKIFEMMPEKDLVSWNTIIAGNARNGLY ETLTMVREMG ANLKPDSFTLS
Subjt:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS

Query:  SVLPLIAENV
        SVLPLIAENV
Subjt:  SVLPLIAENV

A0A6J1ING2 putative pentatricopeptide repeat-containing protein At3g233302.0e-12778.71Show/hide
Query:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS
        MR+STEALVKALL+NP++IKSRS AQQLHAQVLKFQ SSLSNLSLVLSLYSHINLL DSLRLFNTL FP  LAWKS+IRCYTSH LPHQS+ASFIGMLAS
Subjt:  MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLAS

Query:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----
        GLYPDHNVFPSVLKSCALLMDL LGESVHG+I+RVGLDFDLYTGNALMNMYSKL+FLQESGRQRLGT EVFDEMTER  + R++S LVG+ G        
Subjt:  GLYPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS----

Query:  -------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSK---SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT
               E E  +++ D K    +R++EA NLG QIKDISHSK   SED+VRKIFEMMPE+DLVSWNTIIAGNARNGLYEETLTMVR MGDANLKPDSFT
Subjt:  -------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSK---SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFT

Query:  LSSVLPLIAE
        LSSVLPL+AE
Subjt:  LSSVLPLIAE

E5GC23 DYW_deaminase domain-containing protein1.1e-13682.9Show/hide
Query:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL
        +STEALV +LLRNP SIKSRS AQQLHAQVLKFQ SSL NLSL+LS+YSHINLLHDSLRLFNTL FP ALAWKSVIRCYTSH LPH+S+ SFIGMLASGL
Subjt:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL

Query:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------
        YPDHNVFPSVLK+CA+LMDLNLGES+HG+IIRVGLDFDLYTGNALMNMYSKL+FL++SGRQRLG  +V DEMTER +SVR+ASVLVGN+GRKVS      
Subjt:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVS------

Query:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS
                E EAQVL+IDYK R+ YREMEACNLGQQIKDISHS S DSVRKIFEMMPEKDLVSWNTIIAGNARNGLY ETLTMVREMG ANLKPDSFTLS
Subjt:  --------ELEAQVLDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLS

Query:  SVLPLIAENV
        SVLPLIAENV
Subjt:  SVLPLIAENV

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143421.3e-4393.1Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 55.6e-2660.71Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9LW63 Putative pentatricopeptide repeat-containing protein At3g233307.4e-7150.68Show/hide
Query:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL
        SS++AL+K L++NPT IKS+S A+QLHAQ ++ Q  S ++ S+V+S+Y+++ LLH++L LF TL+ P  LAWKSVIRC+T  +L  +++ASF+ M ASG 
Subjt:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL

Query:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQV
         PDHNVFPSVLKSC ++MDL  GESVHG I+R+G+D DLYTGNALMNMY+KL  +      ++    VFDEM +R            N G          
Subjt:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQV

Query:  LDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENV
         D D K        E C +   I         DSVR++FE+MP KD+VS+NTIIAG A++G+YE+ L MVREMG  +LKPDSFTLSSVLP+ +E V
Subjt:  LDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENV

Q9LW64 Uncharacterized protein At3g233251.3e-4393.1Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 51.0e-2766.27Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R R+N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-2427.15Show/hide
Query:  ALLRNPTSIKSRSHAQQLHAQVLKF----QGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGLYPDH
        +LL N  +++S    + +HAQ++K        +LS L     L  H   L  ++ +F T+Q P+ L W ++ R +   + P  ++  ++ M++ GL P+ 
Subjt:  ALLRNPTSIKSRSHAQQLHAQVLKF----QGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGLYPDH

Query:  NVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQVLDID
          FP VLKSCA       G+ +HGH++++G D DLY   +L++MY +   L+++ +       VFD+   R   V S + L                   
Subjt:  NVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQVLDID

Query:  YKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAEN
                          IK  +     ++ +K+F+ +P KD+VSWN +I+G A  G Y+E L + ++M   N++PD  T+ +V+   A++
Subjt:  YKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAEN

AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 109.4e-4593.1Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.3e-7250.68Show/hide
Query:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL
        SS++AL+K L++NPT IKS+S A+QLHAQ ++ Q  S ++ S+V+S+Y+++ LLH++L LF TL+ P  LAWKSVIRC+T  +L  +++ASF+ M ASG 
Subjt:  SSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGL

Query:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQV
         PDHNVFPSVLKSC ++MDL  GESVHG I+R+G+D DLYTGNALMNMY+KL  +      ++    VFDEM +R            N G          
Subjt:  YPDHNVFPSVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQV

Query:  LDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENV
         D D K        E C +   I         DSVR++FE+MP KD+VS+NTIIAG A++G+YE+ L MVREMG  +LKPDSFTLSSVLP+ +E V
Subjt:  LDIDYKQRNTYREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENV

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 109.4e-4593.1Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein9.5e-2128.87Show/hide
Query:  KSRSHAQQLHAQVLK-------FQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGLYPDHNVFPSV
        KS +  QQ HA +LK       F  S L   +        ++  H    + N +  P+     SVIR Y + + P  ++  F  ML   ++PD   F  V
Subjt:  KSRSHAQQLHAQVLK-------FQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGLYPDHNVFPSV

Query:  LKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQVLDIDYKQRNT
        LK+CA       G  +HG  I+ GL  D++  N L+N+Y +  + + + +       V D M  R  +V   S+L     + + + EA+ L  + ++RN 
Subjt:  LKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQVLDIDYKQRNT

Query:  YREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREM-GDANLKPDSFTLSSVLPLIA
           +E+ N    I   + +      +++F+ MP +D+VSWN ++   A  G Y E L +  +M  D+  KPD FTL SVL   A
Subjt:  YREMEACNLGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREM-GDANLKPDSFTLSSVLPLIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGTTCAACTGAAGCATTGGTAAAAGCTCTCCTTAGGAATCCAACGTCCATCAAATCCAGATCACACGCTCAACAACTCCACGCCCAGGTTCTTAAATTTCAAGG
TTCATCTCTTTCCAATCTTTCCCTTGTTCTATCCCTCTACTCCCACATTAATCTTCTCCATGATTCACTCCGTCTTTTCAATACCCTCCAGTTCCCTTCAGCTCTTGCTT
GGAAATCTGTCATCCGTTGCTACACTTCTCATGCCCTTCCTCATCAGTCCGTGGCTTCTTTTATTGGAATGTTGGCCTCTGGCCTATACCCAGATCACAATGTCTTCCCT
TCTGTTCTAAAATCTTGTGCATTGCTCATGGATTTGAATTTGGGGGAGTCCGTTCATGGGCACATCATAAGGGTAGGTTTGGATTTTGATTTGTATACTGGTAATGCGTT
GATGAATATGTATTCGAAACTGCAATTTCTGCAGGAGAGTGGGAGGCAGAGACTTGGTACCCCTGAAGTGTTCGATGAAATGACCGAAAGAGCACAAAGTGTTAGAAGTG
CCTCTGTCTTAGTTGGTAATGAGGGGAGAAAAGTGAGTGAATTGGAAGCACAAGTTCTTGATATAGACTACAAACAGAGAAATACATATAGGGAAATGGAAGCCTGCAAT
CTTGGGCAGCAAATAAAAGATATTTCTCATTCAAAAAGTGAGGATAGCGTGAGAAAGATCTTTGAGATGATGCCTGAAAAGGATCTTGTCTCGTGGAACACCATAATTGC
TGGAAATGCTCGAAATGGTCTTTATGAAGAAACTTTAACGATGGTTAGAGAGATGGGTGATGCCAATCTGAAGCCTGATTCCTTTACTTTGTCCAGTGTACTTCCTCTTA
TTGCGGAGAATGTAGTGGACTGTGCTGGACCTTTCGCTCGCCTGCCTTCTCTGCTTCGTCGCGTCTATTGCAATTCGCGAGCGAACATGCAGGCCAGTGATAGATTTAAC
ATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGCCATGCCGACTTAAATAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTA
TGTTGGACATTACCCCATTCTAGCATACTTCGCCATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGAAAATGCTACTACCCTGCGGGCTTCCTC
CAGAAAGAGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGTTCAACTGAAGCATTGGTAAAAGCTCTCCTTAGGAATCCAACGTCCATCAAATCCAGATCACACGCTCAACAACTCCACGCCCAGGTTCTTAAATTTCAAGG
TTCATCTCTTTCCAATCTTTCCCTTGTTCTATCCCTCTACTCCCACATTAATCTTCTCCATGATTCACTCCGTCTTTTCAATACCCTCCAGTTCCCTTCAGCTCTTGCTT
GGAAATCTGTCATCCGTTGCTACACTTCTCATGCCCTTCCTCATCAGTCCGTGGCTTCTTTTATTGGAATGTTGGCCTCTGGCCTATACCCAGATCACAATGTCTTCCCT
TCTGTTCTAAAATCTTGTGCATTGCTCATGGATTTGAATTTGGGGGAGTCCGTTCATGGGCACATCATAAGGGTAGGTTTGGATTTTGATTTGTATACTGGTAATGCGTT
GATGAATATGTATTCGAAACTGCAATTTCTGCAGGAGAGTGGGAGGCAGAGACTTGGTACCCCTGAAGTGTTCGATGAAATGACCGAAAGAGCACAAAGTGTTAGAAGTG
CCTCTGTCTTAGTTGGTAATGAGGGGAGAAAAGTGAGTGAATTGGAAGCACAAGTTCTTGATATAGACTACAAACAGAGAAATACATATAGGGAAATGGAAGCCTGCAAT
CTTGGGCAGCAAATAAAAGATATTTCTCATTCAAAAAGTGAGGATAGCGTGAGAAAGATCTTTGAGATGATGCCTGAAAAGGATCTTGTCTCGTGGAACACCATAATTGC
TGGAAATGCTCGAAATGGTCTTTATGAAGAAACTTTAACGATGGTTAGAGAGATGGGTGATGCCAATCTGAAGCCTGATTCCTTTACTTTGTCCAGTGTACTTCCTCTTA
TTGCGGAGAATGTAGTGGACTGTGCTGGACCTTTCGCTCGCCTGCCTTCTCTGCTTCGTCGCGTCTATTGCAATTCGCGAGCGAACATGCAGGCCAGTGATAGATTTAAC
ATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGCCATGCCGACTTAAATAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTA
TGTTGGACATTACCCCATTCTAGCATACTTCGCCATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGAAAATGCTACTACCCTGCGGGCTTCCTC
CAGAAAGAGAAGATGATTGA
Protein sequenceShow/hide protein sequence
MRSSTEALVKALLRNPTSIKSRSHAQQLHAQVLKFQGSSLSNLSLVLSLYSHINLLHDSLRLFNTLQFPSALAWKSVIRCYTSHALPHQSVASFIGMLASGLYPDHNVFP
SVLKSCALLMDLNLGESVHGHIIRVGLDFDLYTGNALMNMYSKLQFLQESGRQRLGTPEVFDEMTERAQSVRSASVLVGNEGRKVSELEAQVLDIDYKQRNTYREMEACN
LGQQIKDISHSKSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLTMVREMGDANLKPDSFTLSSVLPLIAENVVDCAGPFARLPSLLRRVYCNSRANMQASDRFN
INSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD