; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016009 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016009
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L34
Genome locationChr03:2138784..2139675
RNA-Seq ExpressionHG10016009
SyntenyHG10016009
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052628.1 50S ribosomal protein L34 [Cucumis melo var. makuwa]3.9e-5578.57Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHC                             LSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]1.3e-6386.9Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVSTGAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSF             SGLSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]5.4e-6588.1Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSF             SGLSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]2.8e-6183.93Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWV +GA+AVRVPSASLVISTGSR CCSVSLNTANNTSARSGLL CSFLPSSSLSCSSSF             SG SLGLDW+S+I VGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]1.2e-6488.1Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVSTGA AVRVPSASLVISTG RGCCSVSLNTANNTSARSGLLHCSFL SSSLSCSSSF             SGLSLGLDWSSKIGVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein6.4e-6486.9Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVSTGAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSF             SGLSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic2.6e-6588.1Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSF             SGLSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5A7UBQ8 50S ribosomal protein L341.9e-5578.57Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHC                             LSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5D3CSJ7 50S ribosomal protein L342.6e-6588.1Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSF             SGLSLGLDWSSK+GVGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic1.3e-6183.93Show/hide
Query:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG
        MAAISVLS PWV +GA+AVRVPSASLVISTGSR CCSVSLNTANNTSARSGLL CSFLPSSSLSCSSSF             SG SLGLDW+S+I VGQG
Subjt:  MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        KGR+LVVRAGKAALCQTKRNRS KSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

SwissProt top hitse value%identityAlignment
P82244 50S ribosomal protein L34, chloroplastic1.3e-3261.05Show/hide
Query:  MAAISVLSFPWVSTG---AIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFL-PSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIG
        MA +S+L     STG   AI  R PSASL   TGSR   +    + N  SARSG LHCSFL PSSSLS            SNF   SGLSLGLD +S  G
Subjt:  MAAISVLSFPWVSTG---AIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFL-PSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIG

Query:  VGQGKGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        V   + R  VVRAGKAALC TKR+RS KSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGK A
Subjt:  VGQGKGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Q04CX6 50S ribosomal protein L347.2e-0472.73Show/hide
Query:  KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        + L R HGFR+RM T NGR VL RRRAKGRKVL
Subjt:  KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q1I2H1 50S ribosomal protein L347.2e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q48BE9 50S ribosomal protein L347.2e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q9LP37 50S ribosomal protein L34, chloroplastic7.9e-2757.14Show/hide
Query:  AAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKI-GVGQG
        +A S L  P  S G I   VPSASL + TG R   S     +  +SA S LLHCSFL SS +S +S F             SGLS+  D SS+  G+   
Subjt:  AAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKI-GVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        + R LVVRAGKAALCQTKR+RS KSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L345.6e-2857.14Show/hide
Query:  AAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKI-GVGQG
        +A S L  P  S G I   VPSASL + TG R   S     +  +SA S LLHCSFL SS +S +S F             SGLS+  D SS+  G+   
Subjt:  AAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKI-GVGQG

Query:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        + R LVVRAGKAALCQTKR+RS KSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  KGRTLVVRAGKAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGATATCAGTATTATCGTTCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCCTCCGCTTCTCTTGTAATCTCCACTGGTTCTAGAGGTTGCTGCTC
CGTATCTCTGAATACCGCCAACAACACTTCCGCTCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCGTGCTCTTCATCTTTTTCAGGTGAGGAAT
TTATACTCTCAAATTTCTGTAACAGTTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGATTGGGGTCGGACAAGGGAAGGGTAGGACCTTAGTGGTTAGGGCTGGC
AAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCTTGTAAATCCTTAGCTCGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGCAGAGCTGTTCTAAAGCG
CAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTCCAACCCAAGTAGCGGAAAGGGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCGATATCAGTATTATCGTTCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCCTCCGCTTCTCTTGTAATCTCCACTGGTTCTAGAGGTTGCTGCTC
CGTATCTCTGAATACCGCCAACAACACTTCCGCTCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCGTGCTCTTCATCTTTTTCAGGTGAGGAAT
TTATACTCTCAAATTTCTGTAACAGTTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGATTGGGGTCGGACAAGGGAAGGGTAGGACCTTAGTGGTTAGGGCTGGC
AAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCTTGTAAATCCTTAGCTCGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGCAGAGCTGTTCTAAAGCG
CAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTCCAACCCAAGTAGCGGAAAGGGTGCTTAA
Protein sequenceShow/hide protein sequence
MAAISVLSFPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGEEFILSNFCNSSGLSLGLDWSSKIGVGQGKGRTLVVRAG
KAALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA