; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016125 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016125
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLysM domain-containing protein
Genome locationChr03:3023219..3025220
RNA-Seq ExpressionHG10016125
SyntenyHG10016125
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.1e-2969.47Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        MAK + SIAIFL A SLLIF+ISV+ R  FR V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+NAFLT
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]4.2e-3076.6Show/hide
Query:  SNSIAIFLFALSLLIFSISVETR-TSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP
        S+S  IFL A SLLIFSISVETR T FRGV   EAGLEL+CNKVYGVKNGDTCFDL Q FKI+T HF+FINPNLNC+ LFIGQWLCL+A L +P
Subjt:  SNSIAIFLFALSLLIFSISVETR-TSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP

TMW90128.1 hypothetical protein EJD97_016167 [Solanum chilense]1.2e-1646.94Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAG----LELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFL
        MAKP+N +  F+  LSLL+F   VE++ +    +          E+EC+KV  VK+GDTCFD+  TF +  + FN INPNLNC+ALF+GQWLC++  L
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAG----LELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]2.0e-2769.47Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        MAK +  IAIFL A  LLIFSISV+       V  AE  LEL+CNK YGVK+GDTCF L  TFK+ST+HFNFINPNLNCSALF+GQWLC+NAFLT
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]3.7e-2666.32Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        MAK + SIAIFL A SLLIF+ISV+       V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+NAFLT
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein2.0e-3076.6Show/hide
Query:  SNSIAIFLFALSLLIFSISVETR-TSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP
        S+S  IFL A SLLIFSISVETR T FRGV   EAGLEL+CNKVYGVKNGDTCFDL Q FKI+T HF+FINPNLNC+ LFIGQWLCL+A L +P
Subjt:  SNSIAIFLFALSLLIFSISVETR-TSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP

A0A0A0KLD2 LysM domain-containing protein1.0e-2969.47Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        MAK + SIAIFL A SLLIF+ISV+ R  FR V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+NAFLT
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like9.5e-2869.47Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        MAK +  IAIFL A  LLIFSISV+       V  AE  LEL+CNK YGVK+GDTCF L  TFK+ST+HFNFINPNLNCSALF+GQWLC+NAFLT
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

A0A6N2B813 LysM domain-containing protein5.8e-1746.94Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAG----LELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFL
        MAKP+N +  F+  LSLL+F   VE++ +    +          E+EC+KV  VK+GDTCFD+  TF +  + FN INPNLNC+ALF+GQWLC++  L
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAG----LELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFL

M1C1H7 LysM domain-containing protein4.4e-1746.81Show/hide
Query:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFL
        MAKP++ +  F+  LSLL+F   VE++ +    +  ++  E+EC+KV  VK+GDTCFD+  TF + ++ FN INPNL C+ALF+GQWLC++  L
Subjt:  MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGCCTTCTAATTCAATTGCCATCTTCCTATTCGCTCTCTCTCTTCTCATTTTCTCAATTTCTGTCGAAACTCGTACTTCCTTCCGTGGGGTTGCTGAGGCAGA
AGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGATCTCCACTGAACACTTCAATTTTATCA
ATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGCCTTCTAATTCAATTGCCATCTTCCTATTCGCTCTCTCTCTTCTCATTTTCTCAATTTCTGTCGAAACTCGTACTTCCTTCCGTGGGGTTGCTGAGGCAGA
AGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGATCTCCACTGAACACTTCAATTTTATCA
ATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG
Protein sequenceShow/hide protein sequence
MAKPSNSIAIFLFALSLLIFSISVETRTSFRGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP