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HG10016126 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016126
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLysM domain-containing protein
Genome locationChr03:3029007..3029436
RNA-Seq ExpressionHG10016126
SyntenyHG10016126
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]5.5e-2466.32Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEG-----GTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS
        MAKA  SIAIFLLA SLLIF+I+V+G       +  EA LELQCN+   VKSGDTCF +AQ FKL+T  F+FINPNLNCSALFV QWLC+NAF++
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEG-----GTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]2.2e-2062.11Show/hide
Query:  MAKAI--TSIAIFLLALSLLIFSIAVEGGTIK----PEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFM
        MAKA+  +S  IFLLA SLLIFSI+VE  +       EA LELQCN+V  VK+GDTCFDL Q FK++T  F+FINPNLNC+ LF+GQWLCL+A +
Subjt:  MAKAI--TSIAIFLLALSLLIFSIAVEGGTIK----PEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFM

KZV16033.1 hypothetical protein F511_26162 [Dorcoceras hygrometricum]1.8e-1450Show/hide
Query:  MAKAITSIAI---FLLALSLLIFSIAVEGG---TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAF
        MAKA  + +I   F L LSL++ +   E     + K +A + L CN V AV  GDTCFD+A++F L+T EF+ INPN+NC ALFVGQWLC++ F
Subjt:  MAKAITSIAI---FLLALSLLIFSIAVEGG---TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAF

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]1.5e-2672.22Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS
        MAKA   IAIFLLA  LLIFSI+V+G  +  E  LELQCN+   VKSGDTCF LA TFKLST  FNFINPNLNCSALFVGQWLC+NAF++
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]7.7e-2670Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS
        MAKA  SIAIFLLA SLLIF+I+V+G  +  EA LELQCN+   VKSGDTCF +AQ FKL+T  F+FINPNLNCSALFV QWLC+NAF++
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein1.0e-2062.11Show/hide
Query:  MAKAI--TSIAIFLLALSLLIFSIAVEGGTIK----PEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFM
        MAKA+  +S  IFLLA SLLIFSI+VE  +       EA LELQCN+V  VK+GDTCFDL Q FK++T  F+FINPNLNC+ LF+GQWLCL+A +
Subjt:  MAKAI--TSIAIFLLALSLLIFSIAVEGGTIK----PEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFM

A0A0A0KLD2 LysM domain-containing protein2.7e-2466.32Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEG-----GTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS
        MAKA  SIAIFLLA SLLIF+I+V+G       +  EA LELQCN+   VKSGDTCF +AQ FKL+T  F+FINPNLNCSALFV QWLC+NAF++
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEG-----GTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like7.5e-2772.22Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS
        MAKA   IAIFLLA  LLIFSI+V+G  +  E  LELQCN+   VKSGDTCF LA TFKLST  FNFINPNLNCSALFVGQWLC+NAF++
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS

A0A2Z7A345 LysM domain-containing protein1.1e-1450Show/hide
Query:  MAKAITSIAI---FLLALSLLIFSIAVEGG---TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAF
        MAKA  + +I   F L LSL++ +   E     + K +A + L CN V AV  GDTCFD+A++F L+T EF+ INPN+NC ALFVGQWLC++ F
Subjt:  MAKAITSIAI---FLLALSLLIFSIAVEGG---TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAF

A0A2Z7A4L5 LysM domain-containing protein8.6e-1550Show/hide
Query:  MAKAITSIAI---FLLALSLLIFSIAVEGG---TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAF
        MAKA  + +I   F L LSL++ +   E     + K +A + L CN V AV  GDTCFD+A++F L+T EF+ INPN+NC ALFVGQWLC++ F
Subjt:  MAKAITSIAI---FLLALSLLIFSIAVEGG---TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTT
GCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATT
GCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTCTCAATGCCTTTATGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTT
GCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATT
GCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTCTCAATGCCTTTATGAGCTAA
Protein sequenceShow/hide protein sequence
MAKAITSIAIFLLALSLLIFSIAVEGGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSALFVGQWLCLNAFMS