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HG10016162 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016162
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationChr03:3246837..3247226
RNA-Seq ExpressionHG10016162
SyntenyHG10016162
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8372407.1 hypothetical protein BUALT_Bualt12G0063000 [Buddleja alternifolia]8.2e-0533.87Show/hide
Query:  PFSIVRLH--HPSFKNFYQVTFNRINLRTVVTSRNSEVRTWMRMV------SATNAGLAIGLDLKY--NGDGVPVLLSICVGVDCLLFTLT-TNQTSSQL
        P SI   H  +PS + +Y V  +   +RT VT+  S VR W+  +         +  L +GL +++  + D  P  L +CVG DCL+F L  TN T + L
Subjt:  PFSIVRLH--HPSFKNFYQVTFNRINLRTVVTSRNSEVRTWMRMV------SATNAGLAIGLDLKY--NGDGVPVLLSICVGVDCLLFTLT-TNQTSSQL

Query:  RYFLIQDSCAFVALNVYRKSRALR
          FL +    FV +  YR    LR
Subjt:  RYFLIQDSCAFVALNVYRKSRALR
TrEMBL top hitse value%identityAlignment
V7B3D8 3'-5' exonuclease domain-containing protein9.8e-0430.91Show/hide
Query:  NFYQVTFNRINLRTVVTSRNSEVRTWMRMVSATNAGLAIGLDLKY------NGDGVPVLLSICVGVDCLLFTLT-TNQTSSQLRYFLIQDSCAFVALNVY
        N Y VTF   N+ T+VTS  SEV TW+   +    GL +GLD+++      N       L +CVG  CL+F +  +      L  FL   +  F  + + 
Subjt:  NFYQVTFNRINLRTVVTSRNSEVRTWMRMVSATNAGLAIGLDLKY------NGDGVPVLLSICVGVDCLLFTLT-TNQTSSQLRYFLIQDSCAFVALNVY

Query:  RKSRALRRHW
          +  L R +
Subjt:  RKSRALRRHW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTCTCCATTGTTAGGCTTCATCATCCATCCTTTAAAAATTTCTATCAAGTAACTTTTAATCGCATCAACCTGAGAACCGTGGTGACAAGTAGAAACTCCGAGGT
TCGAACTTGGATGAGAATGGTGTCGGCAACAAATGCTGGTTTGGCGATTGGGCTCGACTTGAAATACAATGGTGATGGAGTTCCGGTTCTCCTCTCAATCTGTGTAGGAG
TTGACTGCCTACTGTTTACACTCACAACCAACCAAACCTCCAGTCAATTGAGGTATTTTCTGATACAGGATTCTTGTGCATTTGTTGCATTAAATGTGTATCGGAAGAGC
CGGGCATTACGTAGGCATTGGCCTACTTTGTTCATCATCTTGCTGCCCAGCTGGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTCTCCATTGTTAGGCTTCATCATCCATCCTTTAAAAATTTCTATCAAGTAACTTTTAATCGCATCAACCTGAGAACCGTGGTGACAAGTAGAAACTCCGAGGT
TCGAACTTGGATGAGAATGGTGTCGGCAACAAATGCTGGTTTGGCGATTGGGCTCGACTTGAAATACAATGGTGATGGAGTTCCGGTTCTCCTCTCAATCTGTGTAGGAG
TTGACTGCCTACTGTTTACACTCACAACCAACCAAACCTCCAGTCAATTGAGGTATTTTCTGATACAGGATTCTTGTGCATTTGTTGCATTAAATGTGTATCGGAAGAGC
CGGGCATTACGTAGGCATTGGCCTACTTTGTTCATCATCTTGCTGCCCAGCTGGGACTGA
Protein sequenceShow/hide protein sequence
MPFSIVRLHHPSFKNFYQVTFNRINLRTVVTSRNSEVRTWMRMVSATNAGLAIGLDLKYNGDGVPVLLSICVGVDCLLFTLTTNQTSSQLRYFLIQDSCAFVALNVYRKS
RALRRHWPTLFIILLPSWD