; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016298 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016298
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRWP-RK domain-containing protein
Genome locationChr03:4084949..4085591
RNA-Seq ExpressionHG10016298
SyntenyHG10016298
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR003035 - RWP-RK domain
IPR044607 - Transcription factor RKD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134999.1 protein RKD5 isoform X2 [Cucumis sativus]7.9e-6592.41Show/hide
Query:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM
        M+ESC   I EKKRRATSEHIA I+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREED KALMAVTKRQM
Subjt:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        MLQNERE IERTPFRELE ETKRFRQDVFRRKHKARALESQSPSV
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

XP_016899254.1 PREDICTED: protein RKD5 [Cucumis melo]1.2e-6593.84Show/hide
Query:  MKESC-EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQ
        M+ESC E  IAEKKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREED KALMAVTKRQ
Subjt:  MKESC-EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQ

Query:  MMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        MMLQNERE IERTPFRELE ETKRFRQDVFRRKHKARALESQSPSV
Subjt:  MMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

XP_023544127.1 protein RKD5-like isoform X1 [Cucurbita pepo subsp. pepo]1.1e-6390.91Show/hide
Query:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM
        MKE CEPV+A+KKRRATSEHIAGI+LSDLAK F VPITEASR+LNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREEDQKALMAVTKRQM
Subjt:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSP
        MLQNERESIERTPFRELE ETKRFRQDVF+R+HKARAL S SP
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSP

XP_038882831.1 protein RKD5 isoform X1 [Benincasa hispida]5.5e-6692Show/hide
Query:  MKESCE-----PVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAV
        MKE CE     PVIA KKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHRE+D KALMAV
Subjt:  MKESCE-----PVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAV

Query:  TKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        TKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQS SV
Subjt:  TKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

XP_038882834.1 protein RKD5 isoform X2 [Benincasa hispida]7.6e-6895.17Show/hide
Query:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM
        MKE CEPVIA KKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHRE+D KALMAVTKRQM
Subjt:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQS SV
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

TrEMBL top hitse value%identityAlignment
A0A0A0KGY8 RWP-RK domain-containing protein3.8e-6592.41Show/hide
Query:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM
        M+ESC   I EKKRRATSEHIA I+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREED KALMAVTKRQM
Subjt:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        MLQNERE IERTPFRELE ETKRFRQDVFRRKHKARALESQSPSV
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

A0A1S4DTD9 protein RKD55.9e-6693.84Show/hide
Query:  MKESC-EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQ
        M+ESC E  IAEKKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREED KALMAVTKRQ
Subjt:  MKESC-EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQ

Query:  MMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        MMLQNERE IERTPFRELE ETKRFRQDVFRRKHKARALESQSPSV
Subjt:  MMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

A0A5A7SHH9 Protein RKD55.9e-6693.84Show/hide
Query:  MKESC-EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQ
        M+ESC E  IAEKKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREED KALMAVTKRQ
Subjt:  MKESC-EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQ

Query:  MMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        MMLQNERE IERTPFRELE ETKRFRQDVFRRKHKARALESQSPSV
Subjt:  MMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

A0A6J1BWV1 protein RKD51.3e-6086Show/hide
Query:  MKESCEP-----VIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAV
        MKES EP     VIAEKK+RATSEHIAGI+LSDLAK F +PITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREED KALMAV
Subjt:  MKESCEP-----VIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAV

Query:  TKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        TKRQ MLQ+ERESIE TPFRELE ET+RFRQDVFRR+HKARALESQ  SV
Subjt:  TKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

A0A6J1GEC7 protein RKD5-like isoform X15.5e-6490.91Show/hide
Query:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM
        MKE CEPV+A+KKRRATSEHIAGI+LSDLAK F VPITEASR+LNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI+DLQEEAKHREEDQKALMAVTKRQM
Subjt:  MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSP
        MLQNERESIERTPFRELE ETKRFRQDVF+R+HKARAL S SP
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSP

SwissProt top hitse value%identityAlignment
O81791 Protein RKD54.4e-3456.12Show/hide
Query:  IAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEA-KHREEDQKALMAVTKRQMMLQNERE
        I +KK+R  S H+A +SL +L+K F + I EASRNL VGLTVLK+KCREFGI RWPHRKIKS+D LI DLQ EA K +E+++ A MAV K+Q  L+ E+ 
Subjt:  IAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEA-KHREEDQKALMAVTKRQMMLQNERE

Query:  SIERTPFRELEIETKRFRQDVFRRKHKA-RALESQSPSV
        +I + PF E+ IETK+FRQ+ F+++H+A RA ++Q   V
Subjt:  SIERTPFRELEIETKRFRQDVFRRKHKA-RALESQSPSV

Q9CA66 Protein RKD21.1e-1638.51Show/hide
Query:  KESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAK-HREEDQKALMAVTKRQM
        +E    +I++     TS     +S   +++ F +PIT+A+  LNVGLT+LKR+CRE GI RWPHRK+ S++ LI +++E  K   EE+ + L    +   
Subjt:  KESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAK-HREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKH---KARALESQSPSV
        ML+ E+ +IE  P  E + +TKR RQ  F+  H   K R+L+S    V
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKH---KARALESQSPSV

Q9FGD1 Protein RKD31.2e-1539.04Show/hide
Query:  MKE-SCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI---QDLQEEAKHREEDQKALMAVT
        MKE + +  I  K+R      I  +S   + + F +PIT+A++ LN+G+T+LK++CRE GI RWPHRK+ S++ LI   +DL    K R    K   A+ 
Subjt:  MKE-SCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI---QDLQEEAKHREEDQKALMAVT

Query:  KRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQS
            +L+ E++ IE  P  E   +TKR RQ  F+ K+K R L S S
Subjt:  KRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQS

Q9LVU8 Protein RKD44.1e-1639.69Show/hide
Query:  EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNE
        E V  +KKR    +    + +S++ + F  PI +A++ LNVGLTVLK++CRE GI+RWPHRK+KS++ LI++L+      EE+ K           L+  
Subjt:  EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNE

Query:  RESIERTPFRELEIETKRFRQDVFRRKHKAR
        R  IE+ P  EL   TK+ RQ  F+  +K R
Subjt:  RESIERTPFRELEIETKRFRQDVFRRKHKAR

Q9M9U9 Protein RKD19.8e-1838.3Show/hide
Query:  KKRRATSEHIAGISLS------DLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQE-EAKHREEDQKALMAVTKRQMMLQN
        KKRR   E  +  S+S       ++  F +PIT+A+R LN+GLT+LK++CRE GI RWPHRK+ S+  LI +++E E    EE++  L    ++   L+ 
Subjt:  KKRRATSEHIAGISLS------DLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQE-EAKHREEDQKALMAVTKRQMMLQN

Query:  ERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        E+++IE+ P  + E +TKR RQ  F+  HK +     S  +
Subjt:  ERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

Arabidopsis top hitse value%identityAlignment
AT1G18790.1 RWP-RK domain-containing protein7.0e-1938.3Show/hide
Query:  KKRRATSEHIAGISLS------DLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQE-EAKHREEDQKALMAVTKRQMMLQN
        KKRR   E  +  S+S       ++  F +PIT+A+R LN+GLT+LK++CRE GI RWPHRK+ S+  LI +++E E    EE++  L    ++   L+ 
Subjt:  KKRRATSEHIAGISLS------DLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQE-EAKHREEDQKALMAVTKRQMMLQN

Query:  ERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV
        E+++IE+ P  + E +TKR RQ  F+  HK +     S  +
Subjt:  ERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

AT1G74480.1 RWP-RK domain-containing protein7.7e-1838.51Show/hide
Query:  KESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAK-HREEDQKALMAVTKRQM
        +E    +I++     TS     +S   +++ F +PIT+A+  LNVGLT+LKR+CRE GI RWPHRK+ S++ LI +++E  K   EE+ + L    +   
Subjt:  KESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAK-HREEDQKALMAVTKRQM

Query:  MLQNERESIERTPFRELEIETKRFRQDVFRRKH---KARALESQSPSV
        ML+ E+ +IE  P  E + +TKR RQ  F+  H   K R+L+S    V
Subjt:  MLQNERESIERTPFRELEIETKRFRQDVFRRKH---KARALESQSPSV

AT4G35590.1 RWP-RK domain-containing protein3.1e-3556.12Show/hide
Query:  IAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEA-KHREEDQKALMAVTKRQMMLQNERE
        I +KK+R  S H+A +SL +L+K F + I EASRNL VGLTVLK+KCREFGI RWPHRKIKS+D LI DLQ EA K +E+++ A MAV K+Q  L+ E+ 
Subjt:  IAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEA-KHREEDQKALMAVTKRQMMLQNERE

Query:  SIERTPFRELEIETKRFRQDVFRRKHKA-RALESQSPSV
        +I + PF E+ IETK+FRQ+ F+++H+A RA ++Q   V
Subjt:  SIERTPFRELEIETKRFRQDVFRRKHKA-RALESQSPSV

AT5G53040.1 RWP-RK domain-containing protein2.9e-1739.69Show/hide
Query:  EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNE
        E V  +KKR    +    + +S++ + F  PI +A++ LNVGLTVLK++CRE GI+RWPHRK+KS++ LI++L+      EE+ K           L+  
Subjt:  EPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNE

Query:  RESIERTPFRELEIETKRFRQDVFRRKHKAR
        R  IE+ P  EL   TK+ RQ  F+  +K R
Subjt:  RESIERTPFRELEIETKRFRQDVFRRKHKAR

AT5G66990.1 RWP-RK domain-containing protein8.6e-1739.04Show/hide
Query:  MKE-SCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI---QDLQEEAKHREEDQKALMAVT
        MKE + +  I  K+R      I  +S   + + F +PIT+A++ LN+G+T+LK++CRE GI RWPHRK+ S++ LI   +DL    K R    K   A+ 
Subjt:  MKE-SCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLI---QDLQEEAKHREEDQKALMAVT

Query:  KRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQS
            +L+ E++ IE  P  E   +TKR RQ  F+ K+K R L S S
Subjt:  KRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAATCCTGTGAGCCAGTTATTGCAGAAAAGAAAAGGAGAGCAACAAGTGAGCACATTGCTGGAATTTCTTTATCAGATTTGGCTAAAAACTTTGGTGTTCCAAT
CACGGAAGCTTCAAGAAACCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACCGGAAGATAAAGTCCATTGATGGTC
TAATTCAAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATTGAG
AGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCCAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAATCCTGTGAGCCAGTTATTGCAGAAAAGAAAAGGAGAGCAACAAGTGAGCACATTGCTGGAATTTCTTTATCAGATTTGGCTAAAAACTTTGGTGTTCCAAT
CACGGAAGCTTCAAGAAACCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACCGGAAGATAAAGTCCATTGATGGTC
TAATTCAAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATTGAG
AGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCCAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAG
Protein sequenceShow/hide protein sequence
MKESCEPVIAEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIE
RTPFRELEIETKRFRQDVFRRKHKARALESQSPSV