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HG10016345 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016345
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionE3 ubiquitin-protein ligase RNF181 homolog
Genome locationChr03:4343484..4343897
RNA-Seq ExpressionHG10016345
SyntenyHG10016345
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603894.1 hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia]4.4e-4978.63Show/hide
Query:  GIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEV
        GIKDAL CGD+I SCFM+RAK+EGCETS HP LD AAMEREWCSVCLS VME + A++LPCQHEFHKICVERWFHECQ QKTC ICRF++ DED Q TEV
Subjt:  GIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEV

Query:  LTEETVIWFTSFHVIGY
        LTEE VIW TS HVI Y
Subjt:  LTEETVIWFTSFHVIGY

XP_022132660.1 E3 ubiquitin-protein ligase RNF181 homolog [Momordica charantia]8.9e-5072.66Show/hide
Query:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQ
        MV RKIISS YNF+ L+L  GIKDAL CGD+I S   QRAK+EGCE   HP L   A+ REWCSVCLSKVMEGEE+RV  LPC HEFHKIC++RWFHEC 
Subjt:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQ

Query:  KQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIGY
         QKTCPIC+F++RD+D QTTEVLTEE VIWFTSFHV+GY
Subjt:  KQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIGY

XP_022977421.1 uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima]7.3e-4476.15Show/hide
Query:  GDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIW
        GD+I S FM+RAK+EGCETS HP LD AA+EREWCSVC S VME + A++LPCQHEFHKICVERWFHECQ QKTCPIC+F++RDED Q TEVLTEE VIW
Subjt:  GDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIW

Query:  FTSFHVIGY
         TS HVI Y
Subjt:  FTSFHVIGY

XP_031276738.1 E3 ubiquitin-protein ligase At1g12760 [Pistacia vera]1.6e-2248.59Show/hide
Query:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAM----EREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHE
        MV +K+ISS YN I  R     K A    ++IAS   ++A ++G  +S+  +L GA++    E E C VCLS + EGE+ RVLPC HEFH+ C+ RWF+ 
Subjt:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAM----EREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHE

Query:  CQKQKTCPICRFFMR-DEDVQTTEVLTEETVIWFTSFHVIGY
        C   KTCPICRF M+ DE+    E  TEE VIWF+SFHV G+
Subjt:  CQKQKTCPICRFFMR-DEDVQTTEVLTEETVIWFTSFHVIGY

XP_038883680.1 E3 ubiquitin-protein ligase znrf3-like [Benincasa hispida]2.3e-6185.07Show/hide
Query:  VCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQK
        + +KIISSC+NFIALR C GIK+ALLC D IASCFMQRAK++GCETSTHP LDGAAME EWCSVCLSKVME EEARVLPCQHE HKICVERWFH+CQKQK
Subjt:  VCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQK

Query:  TCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVI
        TCPICRF+MRDEDVQTTEVLTEE VIWFT F VI
Subjt:  TCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVI

TrEMBL top hitse value%identityAlignment
A0A4S4DKH4 RING-type domain-containing protein4.9e-2244.93Show/hide
Query:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQ
        MV +K ISS    I L+    IK    C  I  +  +    +EG   S H      A++ E C VCL ++ EGE+ RVLPC+HEFH+ CV RW + C  Q
Subjt:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQ

Query:  KTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY
        KTCP+CRF + DE+  +  E LT+E VIWF+SFHV G+
Subjt:  KTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY

A0A5B6YSP6 Putative E3 ubiquitin-protein ligase RHA2A (Fragment)5.8e-2347.48Show/hide
Query:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVME-GEEARVLPCQHEFHKICVERWFHECQK
        MV +K++S   +FI+LR    IKD+    ++I S    + K EG +      +   A+E E C VCLS++ E GE+ RVLPC HEFH++CV+RWF+ C  
Subjt:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVME-GEEARVLPCQHEFHKICVERWFHECQK

Query:  QKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY
         KTCP+CRF M DE+  Q  E LTEE VIWF+SFH  G+
Subjt:  QKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY

A0A5C7HSR0 RING-type domain-containing protein2.9e-2246.81Show/hide
Query:  MVCRKIISSCYNFIAL-RLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHP--NLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHEC
        MV ++++ S YNFI L     G K ALL  D+ AS        EG   S  P  +   A  E E C VCLS++ +GE+ RVLPC H+FHK+CV+ WF+ C
Subjt:  MVCRKIISSCYNFIAL-RLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHP--NLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHEC

Query:  QKQKTCPICRFFM-RDEDVQTTEVLTEETVIWFTSFHVIGY
           KTCP+CRF M  +E     E LTEE +IWF+SFHV G+
Subjt:  QKQKTCPICRFFM-RDEDVQTTEVLTEETVIWFTSFHVIGY

A0A6J1BT35 E3 ubiquitin-protein ligase RNF181 homolog4.3e-5072.66Show/hide
Query:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQ
        MV RKIISS YNF+ L+L  GIKDAL CGD+I S   QRAK+EGCE   HP L   A+ REWCSVCLSKVMEGEE+RV  LPC HEFHKIC++RWFHEC 
Subjt:  MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQ

Query:  KQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIGY
         QKTCPIC+F++RD+D QTTEVLTEE VIWFTSFHV+GY
Subjt:  KQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIGY

A0A6J1IJV3 uncharacterized protein LOC111477769 isoform X13.5e-4476.15Show/hide
Query:  GDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIW
        GD+I S FM+RAK+EGCETS HP LD AA+EREWCSVC S VME + A++LPCQHEFHKICVERWFHECQ QKTCPIC+F++RDED Q TEVLTEE VIW
Subjt:  GDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIW

Query:  FTSFHVIGY
         TS HVI Y
Subjt:  FTSFHVIGY

SwissProt top hitse value%identityAlignment
Q5NCP0 E3 ubiquitin-protein ligase RNF437.9e-0934.62Show/hide
Query:  RAKQEGCE--TSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        R  Q GC    +  P+   +      C++CL +  EG+E RV+ C HEFH+ CV+ W ++    +TCP+C F + + D
Subjt:  RAKQEGCE--TSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

Q68DV7 E3 ubiquitin-protein ligase RNF437.9e-0944.23Show/hide
Query:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        C++CL +  EG+E RV+ C HEFH+ CV+ W H+    +TCP+C F + + D
Subjt:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

Q6NRV8 E3 ubiquitin-protein ligase arkadia-B3.0e-0841.33Show/hide
Query:  FMQR---AKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICR
        F QR   +KQ+G E +            E C++CLS + EGE+ R LPC H FH++CV++W       K CPICR
Subjt:  FMQR---AKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICR

Q9M2S6 E3 ubiquitin-protein ligase SDIR11.0e-0840Show/hide
Query:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
        AKQ    +S    LD A   ++       CSVCL +V  GE  R LPC H+FH  C++ W    ++Q TCP+C+F
Subjt:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF

Q9ZT50 E3 ubiquitin-protein ligase RHA2A3.5e-0953.85Show/hide
Query:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        C VCLSK+ EGEE R L C+H FHK C+E W H  Q   TCP+CR  +  +D
Subjt:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A2.5e-1053.85Show/hide
Query:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        C VCLSK+ EGEE R L C+H FHK C+E W H  Q   TCP+CR  +  +D
Subjt:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

AT1G53820.1 RING/U-box superfamily protein8.1e-0952.17Show/hide
Query:  CSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR
        C+VCLS +++G++ARVLP C H FH  C++ WF   Q   TCP+CR
Subjt:  CSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR

AT2G47560.1 RING/U-box superfamily protein1.8e-0850Show/hide
Query:  EREWCSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR
        E+E CSVCLS+  E +E R+LP C H FH  C++ WF   + + TCP+CR
Subjt:  EREWCSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR

AT3G51325.1 RING/U-box superfamily protein2.9e-1444.3Show/hide
Query:  GAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFH
        G   E E CSVCL ++   +  + LPC HEFH +CV+ WF+  +K   CP+CRF        TT +LT+E ++WF+SFH
Subjt:  GAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFH

AT3G55530.1 RING/U-box superfamily protein7.3e-1040Show/hide
Query:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
        AKQ    +S    LD A   ++       CSVCL +V  GE  R LPC H+FH  C++ W    ++Q TCP+C+F
Subjt:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGCAGGAAGATAATCTCCTCTTGTTATAACTTCATAGCACTCAGATTGTGTTCAGGTATCAAGGATGCATTATTATGTGGGGATATTATTGCTTCATGTTTTAT
GCAGAGGGCCAAGCAAGAAGGTTGTGAGACTTCGACACATCCCAACTTGGATGGTGCTGCTATGGAGAGGGAGTGGTGTTCAGTGTGTTTGTCAAAAGTAATGGAGGGAG
AGGAAGCACGAGTTCTTCCTTGCCAACACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAAACAAAAAACTTGTCCAATTTGTCGATTTTTTATG
AGAGATGAAGATGTTCAGACAACAGAAGTGCTTACAGAGGAGACGGTAATCTGGTTCACTTCTTTTCATGTTATTGGTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGCAGGAAGATAATCTCCTCTTGTTATAACTTCATAGCACTCAGATTGTGTTCAGGTATCAAGGATGCATTATTATGTGGGGATATTATTGCTTCATGTTTTAT
GCAGAGGGCCAAGCAAGAAGGTTGTGAGACTTCGACACATCCCAACTTGGATGGTGCTGCTATGGAGAGGGAGTGGTGTTCAGTGTGTTTGTCAAAAGTAATGGAGGGAG
AGGAAGCACGAGTTCTTCCTTGCCAACACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAAACAAAAAACTTGTCCAATTTGTCGATTTTTTATG
AGAGATGAAGATGTTCAGACAACAGAAGTGCTTACAGAGGAGACGGTAATCTGGTTCACTTCTTTTCATGTTATTGGTTACTAA
Protein sequenceShow/hide protein sequence
MVCRKIISSCYNFIALRLCSGIKDALLCGDIIASCFMQRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFM
RDEDVQTTEVLTEETVIWFTSFHVIGY