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HG10016458 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016458
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L6, putative
Genome locationChr03:5203398..5203706
RNA-Seq ExpressionHG10016458
SyntenyHG10016458
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB8994308.1 hypothetical protein FH972_026898 [Carpinus fangiana]1.2e-4896.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY+DEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_002310235.1 uncharacterized protein LOC7480126 [Populus trichocarpa]1.6e-4898.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_008440709.1 PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]3.3e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAA+VRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_021593538.1 uncharacterized protein LOC110600918 [Manihot esculenta]9.5e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]1.2e-4897.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAA+VRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A1S3B2D0 60S ribosomal protein L6, mitochondrial1.6e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAA+VRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A2C9UGD8 Ribosomal_L6 domain-containing protein4.6e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5D3CL55 60S ribosomal protein L61.6e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAA+VRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5N6L5L9 Ribosomal_L6 domain-containing protein6.0e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY+DEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785186.0e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAA+VRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
B2IK77 50S ribosomal protein L61.2e-1748.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   V  TGIDK RV Q AA +R+ +PPE YKGKG+ Y  E I +K+GKK
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

P26861 60S ribosomal protein L6, mitochondrial1.1e-3468Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFF FL+I+GVGYKA   A G +L+LKLG+SHE+ L V P+VRVFC K N++CCTG+D  +V QFAA V+SCKPPEVYKGKGI Y +E+I KKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

P82193 50S ribosomal protein L6, chloroplastic1.8e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  V QFAA++RS +PPE YKGKG+ Y+DEV+++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q2JQN4 50S ribosomal protein L63.1e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK  V   AA +R+ +PPE YKGKGI Y+ E +++K GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q38US6 50S ribosomal protein L61.2e-1746.94Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI K +V QFAA +R  +PPE YKGKGI Y DE +++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family2.4e-1843.88Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  + QFAA+VR  +PPE YKGKG+ Y DE++++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein1.2e-4991.18Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR L+LKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDK RVHQFAA+VRSCKPPE YKGKGIMY DEV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTAAGTTTTTTCGGTTCCTGAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAATTGGGATACAGCCATGAAGT
TGAACTAACCGTTCCACCGGCTGTTCGCGTCTTTTGCTTCAAAAACAATGTTGTGTGCTGCACAGGGATTGACAAATATAGAGTGCACCAATTTGCTGCTTCAGTTCGTA
GCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAAGAAACAAGGAAAGAAGTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTAAGTTTTTTCGGTTCCTGAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAATTGGGATACAGCCATGAAGT
TGAACTAACCGTTCCACCGGCTGTTCGCGTCTTTTGCTTCAAAAACAATGTTGTGTGCTGCACAGGGATTGACAAATATAGAGTGCACCAATTTGCTGCTTCAGTTCGTA
GCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAAGAAACAAGGAAAGAAGTCTAAATAA
Protein sequenceShow/hide protein sequence
MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK