; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016478 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016478
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGlycerophosphodiester phosphodiesterase
Genome locationChr03:5355646..5356162
RNA-Seq ExpressionHG10016478
SyntenyHG10016478
Gene Ontology termsGO:0006071 - glycerol metabolic process (biological process)
GO:0006629 - lipid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008889 - glycerophosphodiester phosphodiesterase activity (molecular function)
InterPro domainsIPR017946 - PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
IPR030395 - Glycerophosphodiester phosphodiesterase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036250.1 glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo var. makuwa]1.7e-5380.15Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P  +KSY VNGKI KGWFSVD  S DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

TYK12644.1 glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo var. makuwa]1.7e-5380.15Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P  +KSY VNGKI KGWFSVD  S DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

XP_004143578.1 glycerophosphodiester phosphodiesterase GDPDL6 [Cucumis sativus]2.4e-5581.68Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNL PKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+V+GLHNT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P ++KSY +NGKI KGWFSVD MS DLFD++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

XP_008440682.1 PREDICTED: glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo]1.7e-5380.15Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P  +KSY VNGKI KGWFSVD  S DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

XP_038881366.1 glycerophosphodiester phosphodiesterase GDPDL6-like [Benincasa hispida]1.5e-5784.62Show/hide
Query:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP
        MLK F V+ASLIFSSTFAQH+LPPKEQWLTLKGE PLVIARGGLSGVFPESSPFANQMALV+GL NT LYCNLQLTKDG+GICLTDLRLQNSTNIE++FP
Subjt:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP

Query:  GEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
         + KSYIVNGK  KGWFSVDY+SKDLF+++
Subjt:  GEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

TrEMBL top hitse value%identityAlignment
A0A0A0KM34 Glycerophosphodiester phosphodiesterase1.2e-5581.68Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNL PKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+V+GLHNT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P ++KSY +NGKI KGWFSVD MS DLFD++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

A0A1S3B2A5 Glycerophosphodiester phosphodiesterase8.4e-5480.15Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P  +KSY VNGKI KGWFSVD  S DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

A0A5A7SYT5 Glycerophosphodiester phosphodiesterase8.4e-5480.15Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P  +KSY VNGKI KGWFSVD  S DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

A0A5D3CNJ3 Glycerophosphodiester phosphodiesterase8.4e-5480.15Show/hide
Query:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA+++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ F
Subjt:  MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P  +KSY VNGKI KGWFSVD  S DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

A0A6J1GEB8 Glycerophosphodiester phosphodiesterase3.3e-5077.1Show/hide
Query:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHN-TVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF
        MLKC  V+AS   SS  AQHN P K QWLTL+GEEP+VIARGGLSGVFPESSPFANQMAL SGLHN TVLYCNLQLTKDGIG+CLTDLRLQNSTNIE+IF
Subjt:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHN-TVLYCNLQLTKDGIGICLTDLRLQNSTNIENIF

Query:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        P   K Y VNGKI  G FSVD+MS+DLF+++
Subjt:  PGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

SwissProt top hitse value%identityAlignment
D7SFH9 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 41.7e-2747.73Show/hide
Query:  LKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPG
        L C  V+  L  +   AQ +  P   W TL G+ PLVIARGG SG+FP+SS  A Q A+V  + + VL+C++QLTKDG GIC  DL L N++N E ++P 
Subjt:  LKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPG

Query:  EQKSYIVNGKIFKGWFSVDYMSKDLFDKLLSM
         QKSY VNG   KGWF +D+   +L   L S+
Subjt:  EQKSYIVNGKIFKGWFSVDYMSKDLFDKLLSM

Q7Y208 Glycerophosphodiester phosphodiesterase GDPDL17.2e-2645.04Show/hide
Query:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP
        +L C  V+  L  +   AQ +     +W TL G+ PLVIARGG SG++P+SS  A Q+A ++ + + VL+C+LQLTKDG+GIC  DL L N++ I+ ++P
Subjt:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP

Query:  GEQKSYIVNGKIFKGWFSVDYMSKDLFDKLL
          +KSY VNG   KGWF  D+   +L + LL
Subjt:  GEQKSYIVNGKIFKGWFSVDYMSKDLFDKLL

Q9FGT9 Glycerophosphodiester phosphodiesterase GDPDL63.3e-3146.97Show/hide
Query:  FWVVASLIFSSTFAQHNLP------PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENI
        F+++ SL   S+ A    P      P ++WLTL G+EP V+ARGG SG+FPESS  AN +A+ +      + CNLQ+TKDG+G+CL+D+RL N+T I ++
Subjt:  FWVVASLIFSSTFAQHNLP------PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENI

Query:  FPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        FP  QK+Y VNG+  KGWF +DY +  +F+K+
Subjt:  FPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

Q9LVN0 Glycerophosphodiester phosphodiesterase GDPDL71.5e-2850.47Show/hide
Query:  PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMS
        P ++WLTL G+EP V+ARGG SG+FPESS  AN +A+ +      + CNLQ+TKDG+G+CL+D+ L N+T I ++FP  QK+Y VNG+  KGWF +DY +
Subjt:  PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMS

Query:  KDLFDKL
          +F+ +
Subjt:  KDLFDKL

Q9SZ11 Glycerophosphodiester phosphodiesterase GDPDL37.6e-2846.88Show/hide
Query:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP
        +L C  ++  L+ +   AQ +  PK  W TL G+ PLVIARGG SG+FP+SS  A   A+++ + + VL+C++QLTKD +GIC  DL ++NS++IE ++P
Subjt:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP

Query:  GEQKSYIVNGKIFKGWFSVDYMSKDLFD
          QKSY VNG    GWF++D+  KDL D
Subjt:  GEQKSYIVNGKIFKGWFSVDYMSKDLFD

Arabidopsis top hitse value%identityAlignment
AT1G66970.1 SHV3-like 25.1e-2745.04Show/hide
Query:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP
        +L C  V+  L  +   AQ +     +W TL G+ PLVIARGG SG++P+SS  A Q+A ++ + + VL+C+LQLTKDG+GIC  DL L N++ I+ ++P
Subjt:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP

Query:  GEQKSYIVNGKIFKGWFSVDYMSKDLFDKLL
          +KSY VNG   KGWF  D+   +L + LL
Subjt:  GEQKSYIVNGKIFKGWFSVDYMSKDLFDKLL

AT1G66980.1 suppressor of npr1-1 constitutive 41.2e-2847.73Show/hide
Query:  LKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPG
        L C  V+  L  +   AQ +  P   W TL G+ PLVIARGG SG+FP+SS  A Q A+V  + + VL+C++QLTKDG GIC  DL L N++N E ++P 
Subjt:  LKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPG

Query:  EQKSYIVNGKIFKGWFSVDYMSKDLFDKLLSM
         QKSY VNG   KGWF +D+   +L   L S+
Subjt:  EQKSYIVNGKIFKGWFSVDYMSKDLFDKLLSM

AT4G26690.1 PLC-like phosphodiesterase family protein5.4e-2946.88Show/hide
Query:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP
        +L C  ++  L+ +   AQ +  PK  W TL G+ PLVIARGG SG+FP+SS  A   A+++ + + VL+C++QLTKD +GIC  DL ++NS++IE ++P
Subjt:  MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFP

Query:  GEQKSYIVNGKIFKGWFSVDYMSKDLFD
          QKSY VNG    GWF++D+  KDL D
Subjt:  GEQKSYIVNGKIFKGWFSVDYMSKDLFD

AT5G58050.1 SHV3-like 42.4e-3246.97Show/hide
Query:  FWVVASLIFSSTFAQHNLP------PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENI
        F+++ SL   S+ A    P      P ++WLTL G+EP V+ARGG SG+FPESS  AN +A+ +      + CNLQ+TKDG+G+CL+D+RL N+T I ++
Subjt:  FWVVASLIFSSTFAQHNLP------PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENI

Query:  FPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL
        FP  QK+Y VNG+  KGWF +DY +  +F+K+
Subjt:  FPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL

AT5G58170.1 SHV3-like 51.1e-2950.47Show/hide
Query:  PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMS
        P ++WLTL G+EP V+ARGG SG+FPESS  AN +A+ +      + CNLQ+TKDG+G+CL+D+ L N+T I ++FP  QK+Y VNG+  KGWF +DY +
Subjt:  PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMS

Query:  KDLFDKL
          +F+ +
Subjt:  KDLFDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAAGTGCTTTTGGGTCGTAGCTTCGTTGATCTTTTCCTCCACATTTGCACAACACAATCTCCCTCCTAAAGAACAATGGCTCACTTTGAAAGGGGAAGAGCCACT
AGTAATAGCAAGAGGAGGGTTATCTGGAGTGTTTCCAGAATCAAGTCCTTTTGCAAATCAAATGGCTTTGGTTTCAGGTTTACATAACACAGTTTTGTATTGTAATCTCC
AACTCACCAAAGATGGGATAGGCATTTGCTTAACTGATCTCAGGCTTCAAAATTCAACCAATATTGAAAATATCTTCCCTGGGGAACAAAAGTCTTATATTGTTAATGGA
AAGATTTTCAAAGGATGGTTTTCTGTTGATTACATGTCTAAGGATCTCTTCGACAAACTCTTGAGTATGTTCATTTTCGTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAAGTGCTTTTGGGTCGTAGCTTCGTTGATCTTTTCCTCCACATTTGCACAACACAATCTCCCTCCTAAAGAACAATGGCTCACTTTGAAAGGGGAAGAGCCACT
AGTAATAGCAAGAGGAGGGTTATCTGGAGTGTTTCCAGAATCAAGTCCTTTTGCAAATCAAATGGCTTTGGTTTCAGGTTTACATAACACAGTTTTGTATTGTAATCTCC
AACTCACCAAAGATGGGATAGGCATTTGCTTAACTGATCTCAGGCTTCAAAATTCAACCAATATTGAAAATATCTTCCCTGGGGAACAAAAGTCTTATATTGTTAATGGA
AAGATTTTCAAAGGATGGTTTTCTGTTGATTACATGTCTAAGGATCTCTTCGACAAACTCTTGAGTATGTTCATTTTCGTTCATTGA
Protein sequenceShow/hide protein sequence
MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNG
KIFKGWFSVDYMSKDLFDKLLSMFIFVH