; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016501 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016501
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranslation initiation factor IF-2, putative isoform 1
Genome locationChr03:5486738..5489179
RNA-Seq ExpressionHG10016501
SyntenyHG10016501
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034696.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa]2.8e-10990.6Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ
        MARRKAKKTVKKSS S  R AKDEAA      +DEDVERHAAAI AIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPDILQTPG+SNQRLS GMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+FI
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]1.1e-10888.98Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKK+VKKSS SP+REAKD +AN            DEDVERHA AI AIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSF
        GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPN SAGMRSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDN+VLGMPD+LQTPGVSNQRLS 
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSF

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_004143493.2 uncharacterized protein LOC101215210 [Cucumis sativus]1.4e-10893.75Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED
        MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEI RLITELRLLRSYFNKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTED
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED

Query:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP
        EL TNPADGIDIHASLLHRLS AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPGVSNQRLS GMTPKTRRLPKP
Subjt:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIH
        GEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIH

XP_023543921.1 uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]9.1e-10888.56Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
        MARRKAKK+VKKSS SPVREAKD +AN            DEDVERHA AI AIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQ

Query:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSF
        GEIEVQWK+TEDELHTNPADGIDIHASLLHRLSTAYPN SAGMRSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDN+VLGMPD+LQTPGVSNQRLS 
Subjt:  GEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSF

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIH
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_038891412.1 uncharacterized protein LOC120080833 [Benincasa hispida]9.1e-10891.3Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ
        MARR+AKKTVKKSS SP R+AKDEAAN      DEDVERHAAAI AIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLP+LSISRRGEQGEIEVQ
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT
        WKDTEDELHTNPADGIDIHASLLH LSTAYP  SAGMRSFNGFEFSSKSVKTNPFNVENLQIPN  LEEPSDN+VLGMP+ILQTPGVSNQRLS GMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

TrEMBL top hitse value%identityAlignment
A0A0A0KK81 Uncharacterized protein6.8e-10993.75Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED
        MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTED
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED

Query:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP
        EL TNPADGIDIHASLLHRLS AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPGVSNQRLS GMTPKTRRLPKP
Subjt:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIH
        GEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIH

A0A1S3B1M1 uncharacterized protein LOC1034850081.7e-10792.86Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED
        MARRKAKKTVKKS+ SPV EAKDE ANDEDVERHAAAI AIRDVEI RLITELRLLRSYFNKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTED
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED

Query:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP
        EL TNPADGIDIHASLLHRLS AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+VLGMPDILQTPGV NQRLS GMTPKTRRLPKP
Subjt:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIH
        GEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIH

A0A1S4DWB9 uncharacterized protein LOC1034894361.3e-10790.87Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ
        MARRKAKKTVKKSS S  R AKDEAA      +DEDVERHAAAI AIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPDILQTPG+SNQRLS GMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 11.4e-10990.6Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ
        MARRKAKKTVKKSS S  R AKDEAA      +DEDVERHAAAI AIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQ
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT
        WKDTEDELHTNPADG+DIHASLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPDILQTPG+SNQRLS GMTPKT
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+FI
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI

A0A5D3CLG2 Uncharacterized protein1.7e-10792.86Show/hide
Query:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED
        MARRKAKKTVKKS+ SPV EAKDE ANDEDVERHAAAI AIRDVEI RLITELRLLRSYFNKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTED
Subjt:  MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTED

Query:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP
        EL TNPADGIDIHASLLHRLS AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+VLGMPDILQTPGV NQRLS GMTPKTRRLPKP
Subjt:  ELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIH
        GEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39630.1 unknown protein2.9e-5151.72Show/hide
Query:  MARRKAKKTVK-----KSSLSPVR-EAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ
        M +RKAK+ VK     ++    +R E K E   DE+VER  AAI AIRDVEIE+++T LRLLRSYF +EQL TP+L FF+E LP LSISR  E GEIE++
Subjt:  MARRKAKKTVK-----KSSLSPVR-EAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQ

Query:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPN-YSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPK
        W+D   +      +G+D++ S+L RLS  + + YS    S  G++    +VK N    +N Q+ N V +  S+N +L   D  QTPGV+ QRLSFGMTPK
Subjt:  WKDTEDELHTNPADGIDIHASLLHRLSTAYPN-YSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPK

Query:  TRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH
        T RLPK GEM++S+HGSPLGVYKED NM AI+
Subjt:  TRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGC
AATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCG
AAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATA
GATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAA
TCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTGAGTAACC
AAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATG
GAAGCAATCCATGGTATGTTCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGC
AATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCG
AAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATA
GATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAA
TCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTGAGTAACC
AAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATG
GAAGCAATCCATGGTATGTTCATTTAG
Protein sequenceShow/hide protein sequence
MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGI
DIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNM
EAIHGMFI