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HG10016562 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016562
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionvegetative cell wall protein gp1-like
Genome locationChr03:5968715..5969215
RNA-Seq ExpressionHG10016562
SyntenyHG10016562
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036330.1 hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa]5.9e-5686.14Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP
        MGFSGVRFVVIFALLTRLCMAQAP PAPGS QPLTPP ATPAPSPVV PPSPTPTPNRAPSPSP P SPSPAP+APS APVVPAPAPA  APTP P S+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP

Query:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPVVPPIASPPSPTG EVPSPAPQ P ADNPAGAASHIGGAAT GIA+AGTLFAVIL+
Subjt:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_022950235.1 vegetative cell wall protein gp1-like [Cucurbita moschata]5.5e-3867.6Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAP
        MG SGVR VVIFAL+  LC AQAPAP P     S +P+ P PATPAPSPV FPPSP+ +P RAPSPSP  ASPSPA EAPS AP           P P+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAP

Query:  ATTAPTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        AT+APTPAPSS P PSGSPAG PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  ATTAPTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_022978568.1 vegetative cell wall protein gp1-like [Cucurbita maxima]7.7e-4069.71Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAPATTA
        MGFSGVR VVIFAL+  LC AQAPAPA  S +P+ P PATPAPSPV FPPSP+ +P RAPSPSP  ASPSPA EAPS AP           P P+PAT+A
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAPATTA

Query:  PTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        PTPAPSS P PSGSPAG PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  PTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_023544207.1 vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo]1.7e-3968.72Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAP
        MGFSGVR VVIFAL+  LCMAQAPAP P     S +P+ P PATPAPSPV FPP+P+ +P RAPSPSP  ASPSPA EAPS AP           P P+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAP

Query:  ATTAPTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        AT+APTPAPSS P PSGSPAG PVVPPIASPPSP+  E PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  ATTAPTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_038881138.1 vegetative cell wall protein gp1-like [Benincasa hispida]7.0e-5790.96Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP
        MGFSGVR+VVIFALLTRLCMAQAPAPAPGSSQPL P P TPAPSPVVFPPSPTPTPNRAPS SPAPASPSPAPEAPS AP VPAPAPATTAPTPAPSSS 
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP

Query:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPVVPPIASPPSPTG EVPS APQAPAADNPAGAASHIGGAA FGIAVAGTLFAVILA
Subjt:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

TrEMBL top hitse value%identityAlignment
A0A0A0KG74 Uncharacterized protein1.8e-5080.72Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP
        MGFSGVRFV+IFALLTRLCMAQAPAPAPGS QPLTPP ATPAPSPVV PPSPTPTPNRAPSPSP P SPSPAP+A S       PAPA  APTP P S+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP

Query:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPV+PPIASPPSPTG EVPSPAPQ PAADNPAGA SHIGGAAT GIA+AGTLF VIL+
Subjt:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A5D3CNQ6 Uncharacterized protein2.8e-5686.14Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP
        MGFSGVRFVVIFALLTRLCMAQAP PAPGS QPLTPP ATPAPSPVV PPSPTPTPNRAPSPSP P SPSPAP+APS APVVPAPAPA  APTP P S+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP

Query:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPVVPPIASPPSPTG EVPSPAPQ P ADNPAGAASHIGGAAT GIA+AGTLFAVIL+
Subjt:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A6J1GF55 vegetative cell wall protein gp1-like2.7e-3867.6Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAP
        MG SGVR VVIFAL+  LC AQAPAP P     S +P+ P PATPAPSPV FPPSP+ +P RAPSPSP  ASPSPA EAPS AP           P P+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAP

Query:  ATTAPTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        AT+APTPAPSS P PSGSPAG PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  ATTAPTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A6J1ITI1 vegetative cell wall protein gp1-like3.7e-4069.71Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAPATTA
        MGFSGVR VVIFAL+  LC AQAPAPA  S +P+ P PATPAPSPV FPPSP+ +P RAPSPSP  ASPSPA EAPS AP           P P+PAT+A
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAP---------VVPAPAPATTA

Query:  PTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        PTPAPSS P PSGSPAG PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  PTPAPSSSPTPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A6J1KP28 classical arabinogalactan protein 4-like6.2e-1953.01Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP
        MGFSGVRF+++ ALL   CMAQAPAP              PAP+P   P  P P         PAPA+P     APS++P  P PAP T+ PTPAP    
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSP

Query:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPSGSPAGGPVVP +ASP        PS AP+ P ADNP GAAS IG A T G+AVAG+L AV+LA
Subjt:  TPSGSPAGGPVVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

SwissProt top hitse value%identityAlignment
O10341 Uncharacterized 29.3 kDa protein3.2e-0441.38Show/hide
Query:  PAPAPGSSQPLTPPPA---TPAPSPVVFP-PSPTPTPNRAPSPSPAPA-SPSPAPEAPSTAPVVPAPAPA-TTAPTPAPSSSPTPSGSPAGGPVVPPIAS
        P P P  +   TP PA   TP PSP + P PSPTPTP+  PSP+P+P  +PSP P    T    P+P P  +  PTP+P+ SPTPS +P   P   P  +
Subjt:  PAPAPGSSQPLTPPPA---TPAPSPVVFP-PSPTPTPNRAPSPSPAPA-SPSPAPEAPSTAPVVPAPAPA-TTAPTPAPSSSPTPSGSPAGGPVVPPIAS

Query:  P---PSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGT
        P   PSPT    P+P+P  P +  P  + S +G    F  +V  T
Subjt:  P---PSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGT

Q9FPQ6 Vegetative cell wall protein gp11.9e-0448.31Show/hide
Query:  PAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPS-TAPVVPAPAPATTA-PTPAPSSSPTPSGSPAGGPVVPPIASPPSP
        P+PAP S  P +P P +PAP P   PPSP P    +P+P P+PA PSPAP +P+  +P  P+PAP + A P+PAP S P+P+  P+  P  PP  SPPSP
Subjt:  PAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPS-TAPVVPAPAPATTA-PTPAPSSSPTPSGSPAGGPVVPPIASPPSP

Query:  TGNEVPSPAPQAPAADNP
             PSPAP +P+   P
Subjt:  TGNEVPSPAPQAPAADNP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCGCCAGCGCCGGCGCCGGGTTCTTCACAGCCTCTAACTCCGCC
ACCAGCCACGCCAGCGCCTTCTCCGGTCGTTTTCCCTCCATCTCCGACTCCGACGCCAAACAGAGCACCATCGCCTTCACCGGCTCCGGCGTCGCCCTCACCCGCTCCGG
AAGCTCCATCAACGGCACCAGTGGTACCTGCTCCAGCTCCGGCGACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCGCTGGTGGTCCT
GTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAAACGAGGTGCCTTCACCTGCACCTCAAGCACCAGCGGCCGACAACCCAGCTGGAGCGGCATCGCACATCGG
CGGAGCGGCGACATTCGGGATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCGCCAGCGCCGGCGCCGGGTTCTTCACAGCCTCTAACTCCGCC
ACCAGCCACGCCAGCGCCTTCTCCGGTCGTTTTCCCTCCATCTCCGACTCCGACGCCAAACAGAGCACCATCGCCTTCACCGGCTCCGGCGTCGCCCTCACCCGCTCCGG
AAGCTCCATCAACGGCACCAGTGGTACCTGCTCCAGCTCCGGCGACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCGCTGGTGGTCCT
GTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAAACGAGGTGCCTTCACCTGCACCTCAAGCACCAGCGGCCGACAACCCAGCTGGAGCGGCATCGCACATCGG
CGGAGCGGCGACATTCGGGATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG
Protein sequenceShow/hide protein sequence
MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVVFPPSPTPTPNRAPSPSPAPASPSPAPEAPSTAPVVPAPAPATTAPTPAPSSSPTPSGSPAGGP
VVPPIASPPSPTGNEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA