; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016590 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016590
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMADS-box transcription factor 23-like
Genome locationChr03:6212047..6213103
RNA-Seq ExpressionHG10016590
SyntenyHG10016590
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647540.1 hypothetical protein Csa_003420 [Cucumis sativus]1.5e-4279.37Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGEQLYGLS+KDLNNLE+QLEFSLQSIRIK              KGI+MHQENIELSNKV+L+CQENMELHRKVYGHDSRSEMNLATGNALIPYGII   
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPEQQA
         AA PIAGDAL VPIHLQLSP EQQA
Subjt:  DAAVPIAGDALRVPIHLQLSPPEQQA

XP_008440514.1 PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo]1.0e-4387.61Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIITAADAAVPIAGDALR
        MGEQLYGLSIKDLNNLE+QLEFSLQSIRIKKGI+MHQENIEL NKV+L+CQENMELHRKVYGH+ SRSEMNLA TGNALIPYGIITA  AA PIAG+ L 
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIITAADAAVPIAGDALR

Query:  VPIHLQLSPPEQQ
        VPIHLQLSPPEQQ
Subjt:  VPIHLQLSPPEQQ

XP_031742506.1 MADS-box transcription factor 23 isoform X1 [Cucumis sativus]1.5e-4279.37Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGEQLYGLS+KDLNNLE+QLEFSLQSIRIK              KGI+MHQENIELSNKV+L+CQENMELHRKVYGHDSRSEMNLATGNALIPYGII   
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPEQQA
         AA PIAGDAL VPIHLQLSP EQQA
Subjt:  DAAVPIAGDALRVPIHLQLSPPEQQA

XP_031742507.1 MADS-box transcription factor 23 isoform X2 [Cucumis sativus]1.5e-4279.37Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGEQLYGLS+KDLNNLE+QLEFSLQSIRIK              KGI+MHQENIELSNKV+L+CQENMELHRKVYGHDSRSEMNLATGNALIPYGII   
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPEQQA
         AA PIAGDAL VPIHLQLSP EQQA
Subjt:  DAAVPIAGDALRVPIHLQLSPPEQQA

XP_038882310.1 MADS-box transcription factor 23-like [Benincasa hispida]6.4e-4683.2Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGEQLYGLSIKDLNNLESQLEFSLQSIRIK              KGI+MHQENIEL+NKVNL+CQENMELHRKVYGHDSRSEMNL TGNALIPYGIITA 
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPEQQ
         AAVPIAGDALRVPIHLQL+PPEQQ
Subjt:  DAAVPIAGDALRVPIHLQLSPPEQQ

TrEMBL top hitse value%identityAlignment
A0A1S3B0V7 MADS-box transcription factor 23 isoform X34.9e-4487.61Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIITAADAAVPIAGDALR
        MGEQLYGLSIKDLNNLE+QLEFSLQSIRIKKGI+MHQENIEL NKV+L+CQENMELHRKVYGH+ SRSEMNLA TGNALIPYGIITA  AA PIAG+ L 
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIITAADAAVPIAGDALR

Query:  VPIHLQLSPPEQQ
        VPIHLQLSPPEQQ
Subjt:  VPIHLQLSPPEQQ

A0A1S3B1W8 MADS-box transcription factor 23 isoform X13.9e-4177.95Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIIT
        MGEQLYGLSIKDLNNLE+QLEFSLQSIRIK              KGI+MHQENIEL NKV+L+CQENMELHRKVYGH+ SRSEMNLA TGNALIPYGIIT
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIIT

Query:  AADAAVPIAGDALRVPIHLQLSPPEQQ
        A  AA PIAG+ L VPIHLQLSPPEQQ
Subjt:  AADAAVPIAGDALRVPIHLQLSPPEQQ

A0A1S3B214 MADS-box transcription factor 23 isoform X23.9e-4177.95Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIIT
        MGEQLYGLSIKDLNNLE+QLEFSLQSIRIK              KGI+MHQENIEL NKV+L+CQENMELHRKVYGH+ SRSEMNLA TGNALIPYGIIT
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGIIT

Query:  AADAAVPIAGDALRVPIHLQLSPPEQQ
        A  AA PIAG+ L VPIHLQLSPPEQQ
Subjt:  AADAAVPIAGDALRVPIHLQLSPPEQQ

A0A6J1INS2 MADS-box transcription factor 23-like isoform X25.6e-4076.8Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGEQLYGLSIKDLN+LESQLEFSLQSIRIK              KGI+MHQ+N+EL+NKVNLFCQENMELHRKVYGHDSR EM++ATGN LIPYGII+AA
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDA-LRVPIHLQLSPPEQ
         AA PI GDA LRVPIHLQLSP EQ
Subjt:  DAAVPIAGDA-LRVPIHLQLSPPEQ

A0A6J1IST8 MADS-box transcription factor 23-like isoform X15.6e-4076.8Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGEQLYGLSIKDLN+LESQLEFSLQSIRIK              KGI+MHQ+N+EL+NKVNLFCQENMELHRKVYGHDSR EM++ATGN LIPYGII+AA
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDA-LRVPIHLQLSPPEQ
         AA PI GDA LRVPIHLQLSP EQ
Subjt:  DAAVPIAGDA-LRVPIHLQLSPPEQ

SwissProt top hitse value%identityAlignment
A2RVQ5 Agamous-like MADS-box protein AGL161.6e-1239.02Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKK--------------GIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGE+L GLS++ L NLE+QLE SL+ +R+KK              G ++HQEN++L  KVNL  Q+NMELH KV        + +A  N+L+  G+    
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKK--------------GIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPE
                D     +HLQLS P+
Subjt:  DAAVPIAGDALRVPIHLQLSPPE

Q38840 Agamous-like MADS-box protein AGL172.2e-0936.59Show/hide
Query:  GEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAD
        G +L GLS+K+L N+ESQLE SL+ IR+K              K  ++H EN+ELS KV    QEN+EL++K YG         +  N L  + ++ A  
Subjt:  GEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAD

Query:  AAVPIAGDALRVPIHLQLSPPEQ
         +           + LQLS PEQ
Subjt:  AAVPIAGDALRVPIHLQLSPPEQ

Q6EP49 MADS-box transcription factor 272.8e-1237.93Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGE L GL++K+L +LE+QLE SL+S+R K              KG ++HQEN+EL  K++L  QEN EL++K+Y  +  SE+N    ++  PY      
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIH
           VP+      +P H
Subjt:  DAAVPIAGDALRVPIH

Q6Z6W2 MADS-box transcription factor 572.9e-0935.24Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGE+L GL ++DL  LE++LE SL++IR++              KG ++HQENIELS  +N+  Q+ +EL+ K+   + R   + A  ++  PY      
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVP
        +A +P
Subjt:  DAAVP

Q9SZJ6 Agamous-like MADS-box protein AGL215.3e-1142.11Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYG-HDSRSEM----NLATGNALIPYGIITAADAAVPIAGD
        MGEQL GLS+ +LN+LE+Q+E SL+ IR++K  ++ QE  ELS K NL  QEN++L RKV   H    E+     +A  N              V +A D
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYG-HDSRSEM----NLATGNALIPYGIITAADAAVPIAGD

Query:  ALRVPIHLQLSPPE
             I LQLS PE
Subjt:  ALRVPIHLQLSPPE

Arabidopsis top hitse value%identityAlignment
AT2G14210.1 AGAMOUS-like 441.6e-0736.9Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMN
        +GE+L G++  DL NLE QL  SL+ +R+K              KG ++ +EN EL N V++  +EN++L +KV+G  +  E N
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMN

AT2G22630.1 AGAMOUS-like 171.6e-1036.59Show/hide
Query:  GEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAD
        G +L GLS+K+L N+ESQLE SL+ IR+K              K  ++H EN+ELS KV    QEN+EL++K YG         +  N L  + ++ A  
Subjt:  GEQLYGLSIKDLNNLESQLEFSLQSIRIK--------------KGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAD

Query:  AAVPIAGDALRVPIHLQLSPPEQ
         +           + LQLS PEQ
Subjt:  AAVPIAGDALRVPIHLQLSPPEQ

AT3G57230.1 AGAMOUS-like 161.2e-1339.02Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKK--------------GIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGE+L GLS++ L NLE+QLE SL+ +R+KK              G ++HQEN++L  KVNL  Q+NMELH KV        + +A  N+L+  G+    
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKK--------------GIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPE
                D     +HLQLS P+
Subjt:  DAAVPIAGDALRVPIHLQLSPPE

AT3G57230.2 AGAMOUS-like 161.2e-1339.02Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKK--------------GIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA
        MGE+L GLS++ L NLE+QLE SL+ +R+KK              G ++HQEN++L  KVNL  Q+NMELH KV        + +A  N+L+  G+    
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKK--------------GIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAA

Query:  DAAVPIAGDALRVPIHLQLSPPE
                D     +HLQLS P+
Subjt:  DAAVPIAGDALRVPIHLQLSPPE

AT4G37940.1 AGAMOUS-like 213.8e-1242.11Show/hide
Query:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYG-HDSRSEM----NLATGNALIPYGIITAADAAVPIAGD
        MGEQL GLS+ +LN+LE+Q+E SL+ IR++K  ++ QE  ELS K NL  QEN++L RKV   H    E+     +A  N              V +A D
Subjt:  MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYG-HDSRSEM----NLATGNALIPYGIITAADAAVPIAGD

Query:  ALRVPIHLQLSPPE
             I LQLS PE
Subjt:  ALRVPIHLQLSPPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGCAACTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTTAGCTTACAAAGCATCCGAATTAAAAAGGGAATTATGATGCACCA
AGAAAATATAGAGCTGAGCAATAAAGTAAATCTTTTTTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCCAGATCAGAGATGAACTTAGCCACCG
GAAATGCCTTGATTCCATATGGTATCATCACCGCCGCTGACGCCGCCGTCCCTATTGCAGGCGACGCCCTACGTGTGCCAATCCATCTTCAGCTCAGCCCGCCGGAGCAA
CAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGCAACTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTTAGCTTACAAAGCATCCGAATTAAAAAGGGAATTATGATGCACCA
AGAAAATATAGAGCTGAGCAATAAAGTAAATCTTTTTTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCCAGATCAGAGATGAACTTAGCCACCG
GAAATGCCTTGATTCCATATGGTATCATCACCGCCGCTGACGCCGCCGTCCCTATTGCAGGCGACGCCCTACGTGTGCCAATCCATCTTCAGCTCAGCCCGCCGGAGCAA
CAAGCTTAA
Protein sequenceShow/hide protein sequence
MGEQLYGLSIKDLNNLESQLEFSLQSIRIKKGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAADAAVPIAGDALRVPIHLQLSPPEQ
QA