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HG10016783 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016783
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationChr03:8040857..8041258
RNA-Seq ExpressionHG10016783
SyntenyHG10016783
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA37539.1 hypothetical protein CARUB_v10011765mg [Capsella rubella]4.2e-0442.11Show/hide
Query:  LAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
        L V   +  AL  ++T++++ SD    V LL  K+S +   G   D +LL C  F S SF ++ RSCNS+ADSLAK
Subjt:  LAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
XP_030939704.1 uncharacterized protein LOC115964557 [Quercus lobata]7.1e-0438.89Show/hide
Query:  DSVYLP---PIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
        D ++LP    +V+ LA  K I LAL+L I +V +  D +  +  L    S  +  G  +D+      LF S SFS V R  N VADSLAK
Subjt:  DSVYLP---PIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
TrEMBL top hitse value%identityAlignment
A0A2I4FLN6 uncharacterized protein LOC1090001955.9e-0435.87Show/hide
Query:  AASKQDSVYLPPIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
        A  K+D V  P  +++LAV +G++  LSL I N+ + SDCL  V  L   Q +L+  G  + +      LF + S   V R  N VA +LA+
Subjt:  AASKQDSVYLPPIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
R0I5K1 RNase H domain-containing protein2.0e-0442.11Show/hide
Query:  LAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
        L V   +  AL  ++T++++ SD    V LL  K+S +   G   D +LL C  F S SF ++ RSCNS+ADSLAK
Subjt:  LAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.5e-0432.99Show/hide
Query:  SVYLPPIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAKGLETIFCTAPG
        +V LP + + +A+   ++ A S+ IT + + SD  Q +  +  +  +    G   D   L    F   SFSFV RS N VAD LAK     F   PG
Subjt:  SVYLPPIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAKGLETIFCTAPG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCAAAACAGGATTCTGTTTATCTCCCTCCCATTGTTAAAATTCTCGCTGTCACAAAAGGCATTAAGCTAGCTTTATCTCTACAAATTACAAATGTTCGTAT
ACACTCTGACTGTCTCCAAGCCGTCAATCTCTTATTTGGGAAGCAGTCTGCATTGAATAAGATTGGTTGTTGTGTGGACGAAGCCTTGTTATGGTGCAATCTTTTTTATT
CCTTCTCTTTTAGTTTTGTTAATAGGAGTTGTAATAGTGTTGCTGACTCTTTAGCTAAAGGGCTAGAGACAATCTTCTGTACAGCTCCTGGGTGGAAAATTTCCTGCCCC
ACCTCCTTCGTCTTGTCAAACAAGACGTTTCTTCTTCTGCCTATGAAGCGTAATAATATGAGTTTCCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCTCAAAACAGGATTCTGTTTATCTCCCTCCCATTGTTAAAATTCTCGCTGTCACAAAAGGCATTAAGCTAGCTTTATCTCTACAAATTACAAATGTTCGTAT
ACACTCTGACTGTCTCCAAGCCGTCAATCTCTTATTTGGGAAGCAGTCTGCATTGAATAAGATTGGTTGTTGTGTGGACGAAGCCTTGTTATGGTGCAATCTTTTTTATT
CCTTCTCTTTTAGTTTTGTTAATAGGAGTTGTAATAGTGTTGCTGACTCTTTAGCTAAAGGGCTAGAGACAATCTTCTGTACAGCTCCTGGGTGGAAAATTTCCTGCCCC
ACCTCCTTCGTCTTGTCAAACAAGACGTTTCTTCTTCTGCCTATGAAGCGTAATAATATGAGTTTCCGTTAA
Protein sequenceShow/hide protein sequence
MAASKQDSVYLPPIVKILAVTKGIKLALSLQITNVRIHSDCLQAVNLLFGKQSALNKIGCCVDEALLWCNLFYSFSFSFVNRSCNSVADSLAKGLETIFCTAPGWKISCP
TSFVLSNKTFLLLPMKRNNMSFR