; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10016958 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016958
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionVacuolar protein sorting 55
Genome locationChr03:9677833..9679043
RNA-Seq ExpressionHG10016958
SyntenyHG10016958
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143389.2 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]7.5e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

XP_008462591.2 PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucumis melo]7.5e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

XP_022133002.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Momordica charantia]7.5e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

XP_022133003.1 vacuolar protein sorting-associated protein 55 homolog isoform X2 [Momordica charantia]7.5e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

XP_022133004.1 vacuolar protein sorting-associated protein 55 homolog isoform X3 [Momordica charantia]7.5e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

TrEMBL top hitse value%identityAlignment
A0A0A0KHI6 Uncharacterized protein3.6e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

A0A1S3CHB4 vacuolar protein sorting-associated protein 55 homolog isoform X23.6e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

A0A6J1BUQ3 vacuolar protein sorting-associated protein 55 homolog isoform X33.6e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

A0A6J1BVE3 vacuolar protein sorting-associated protein 55 homolog isoform X13.6e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

A0A6J1BXT5 vacuolar protein sorting-associated protein 55 homolog isoform X23.6e-4398.89Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

SwissProt top hitse value%identityAlignment
Q9AST6 Vacuolar protein sorting-associated protein 55 homolog2.4e-1550.63Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein1.7e-1650.63Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein1.7e-1650.63Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein1.7e-1650.63Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        + +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL

AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein8.9e-4286.67Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

AT3G11530.2 Vacuolar protein sorting 55 (VPS55) family protein8.9e-4286.67Show/hide
Query:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        +ALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Subjt:  AALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTACTAATCATGTTTTCCCTGCAGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTAGCCGAGATGGTGG
AGGATGGATAGGTGCTGCTAAGTTCTTGACGGGTGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATAGACACAGGAGCCATGTTCA
TAGAATTCGTTTCCTTCTTCATATTTGTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTACTAATCATGTTTTCCCTGCAGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTAGCCGAGATGGTGG
AGGATGGATAGGTGCTGCTAAGTTCTTGACGGGTGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATAGACACAGGAGCCATGTTCA
TAGAATTCGTTTCCTTCTTCATATTTGTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA
Protein sequenceShow/hide protein sequence
MRTNHVFPAALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW