CuGenDBv2

Gene ID	HG10016962
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Alpha-amylase
Genome location	Chr03:9710455..9711800
RNA-Seq Expression	HG10016962
Synteny	HG10016962
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595177.1 hypothetical protein SDJN03_11730, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-86

84.34

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M AI++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S V SPC RN  L PKSS+ENTDI+PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEIS

XP_004143327.1 uncharacterized protein LOC101214488 [Cucumis sativus]

1.8e-91

88.06

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QFIR  NVNSRP + S M S  PSLVFFA NTR+RQIS FS+V  PCHR PKLVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  V
        V
Subjt:  V

XP_008462584.1 PREDICTED: uncharacterized protein LOC103500909 [Cucumis melo]

3.0e-91

88.06

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QF R  NVNSRP +LSPM S  PSLVFFA NTRHRQIS FS+   PCHR   LVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT STSPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  V
        V
Subjt:  V

XP_022972616.1 uncharacterized protein LOC111471157 [Cucurbita maxima]

1.7e-86

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M AI++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S V SPC RN  L PKSS+ENTDI PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+ V
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV

XP_038881940.1 uncharacterized protein LOC120073272 [Benincasa hispida]

1.0e-94

89.5

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M+AIS+STKQFI  T VNSRP ILSPMAS PSLVF AWNTRHRQIS+FS++ SPC RN KLVPKSSDEN DIVPSEDDPEDGVSLGTMKLPSDIDIARF+
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV
        VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT +T+PIFRAIRNGRL+DQSPPGEPRIMRSLL ALKKSVEISRV
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFD4 Uncharacterized protein

8.6e-92

88.06

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QFIR  NVNSRP + S M S  PSLVFFA NTR+RQIS FS+V  PCHR PKLVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  V
        V
Subjt:  V

A0A1S3CH91 uncharacterized protein LOC103500909

1.5e-91

88.06

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QF R  NVNSRP +LSPM S  PSLVFFA NTRHRQIS FS+   PCHR   LVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT STSPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  V
        V
Subjt:  V

A0A5A7SHD0 Uncharacterized protein

1.5e-91

88.06

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF
        MDAISYST QF R  NVNSRP +LSPM S  PSLVFFA NTRHRQIS FS+   PCHR   LVPKSSDEN DIVPSEDDPEDGVSLGTMKLP D DIARF
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMAS-PPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARF

Query:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR
        +VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPAT STSPIFRAIRNGRLKDQSPPGEPRIMRSLL ALKKSVEISR
Subjt:  RVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISR

Query:  V
        V
Subjt:  V

A0A6J1HDQ9 uncharacterized protein LOC111463229

1.9e-86

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M  I++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S + SPC RN  L PKSS+ENTDI+PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+ V
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV

A0A6J1I6G0 uncharacterized protein LOC111471157

8.4e-87

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Query:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR
        M AI++STK  IR T VNSRPSILS MAS PSLVF  WNTR RQ SK S V SPC RN  L PKSS+ENTDI PSED+PEDGVSLGTMKLPSDIDIA+F 
Subjt:  MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFR

Query:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV
        VLLFQWANSLCQGANLPLPVPL+VDKI SGVRLGFI+IGDGKTEVLVYIDCLVFPAT S+SPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEI+ V
Subjt:  VLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G36145.1 unknown protein

4.6e-45

62.03

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Query:  QISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFRVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGD-GK
        Q+   +   SP      +V  +S  N  +   E   EDGVSLGTMKLP D D+ARF  LLFQWANSLCQGANLPLPVPLKVD+I  G RLGFI + D GK
Subjt:  QISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFRVLLFQWANSLCQGANLPLPVPLKVDKIPSGVRLGFITIGD-GK

Query:  TEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV
        T+V VYIDCLVF  TT    +F+A RNGR KD++PPGE RIMRSLL ALKK+VEI+RV
Subjt:  TEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV

Sequences

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CDS sequence

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ATGGACGCCATCTCTTATTCAACAAAGCAATTCATTCGTTGCACAAATGTCAATTCTCGGCCATCTATTTTGTCTCCAATGGCGTCTCCTCCGTCACTGGTTTTCTTTGC
TTGGAACACTCGGCATCGGCAAATCTCCAAGTTCTCCGAAGTCTTAAGTCCATGCCACAGGAATCCGAAGCTGGTGCCCAAGTCTTCGGATGAGAACACCGATATTGTGC
CCTCAGAAGATGACCCTGAAGATGGAGTATCGCTTGGGACCATGAAATTGCCTTCCGACATTGACATTGCTAGATTTCGGGTCTTACTCTTCCAGTGGGCCAATAGTCTT
TGCCAGGGAGCTAACTTGCCCCTTCCAGTGCCTTTGAAGGTTGACAAAATACCCAGTGGAGTTAGACTTGGTTTTATCACAATTGGAGATGGAAAGACAGAAGTTCTCGT
GTATATAGATTGTTTGGTTTTTCCTGCTACTACCAGTACTAGTCCAATTTTTCGAGCCATAAGAAATGGACGCTTAAAGGACCAGTCACCTCCTGGTGAACCGAGAATTA
TGAGGAGTCTTTTGAGTGCTTTGAAAAAATCAGTTGAAATTTCTAGAGTATGA

mRNA sequence

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Protein sequence

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MDAISYSTKQFIRCTNVNSRPSILSPMASPPSLVFFAWNTRHRQISKFSEVLSPCHRNPKLVPKSSDENTDIVPSEDDPEDGVSLGTMKLPSDIDIARFRVLLFQWANSL
CQGANLPLPVPLKVDKIPSGVRLGFITIGDGKTEVLVYIDCLVFPATTSTSPIFRAIRNGRLKDQSPPGEPRIMRSLLSALKKSVEISRV

HG10016962 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome