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HG10016982 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10016982
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLysM domain-containing protein
Genome locationChr03:9868312..9868596
RNA-Seq ExpressionHG10016982
SyntenyHG10016982
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2970656.1 Peptidoglycan-binding lysin domain-containing [Olea europaea subsp. europaea]1.7e-2067.09Show/hide
Query:  LVLSCLLWCCKSNREEYYSMD---------CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        L L  +L CC+S   EYY++          CDEIYVV EGETL +ISEKCGDP+IVEENPHI DPDDVFPGLVIKITPF
Subjt:  LVLSCLLWCCKSNREEYYSMD---------CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]2.4e-3072.63Show/hide
Query:  MGRKRSSS--------EVNLVVVLVLSCLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        MG++ SSS        +V  +V+LVLSCL+WCCKS+   +Y  +C+EIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
Subjt:  MGRKRSSS--------EVNLVVVLVLSCLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]8.3e-2369.32Show/hide
Query:  MGRKRSSSEVNLVVVLVLS-CLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        M ++ SS    LV+VLVLS   +WCC S   +   M CDEIYVV EGETLQSISEKCGDPFI E NPHIND DDVFPGLVIKITPF H
Subjt:  MGRKRSSSEVNLVVVLVLS-CLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

XP_022744694.1 uncharacterized protein LOC111295462 [Durio zibethinus]5.9e-2155.56Show/hide
Query:  MGRKRSSSEVN----------LVVVLVLSCLLWCCKSNREEYY-----------SMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV
        MGR  S+SE+           + V+L+LSC   CC+ +  + Y           +  CDEIYVV EGETLQ+ISEKCGDPFIVEENPHI+DPDDVFPGLV
Subjt:  MGRKRSSSEVN----------LVVVLVLSCLLWCCKSNREEYY-----------SMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV

Query:  IKITPFHH
        IKITPF++
Subjt:  IKITPFHH

XP_022862673.1 uncharacterized protein LOC111382869 [Olea europaea var. sylvestris]1.7e-2067.09Show/hide
Query:  LVLSCLLWCCKSNREEYYSM---------DCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        L L  +L CC+S+  EYY++          CDEIYVV EGETL +ISEKCGDP+IVEENPHI DPDDVFPGLVIKITPF
Subjt:  LVLSCLLWCCKSNREEYYSM---------DCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

TrEMBL top hitse value%identityAlignment
A0A1U8AYB4 uncharacterized protein LOC1046077161.1e-2068.75Show/hide
Query:  VVLVLSCLLWCCKSNREE--------YYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        +VLV+  LL CC S+  E          S  CDEIYVV EGETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF
Subjt:  VVLVLSCLLWCCKSNREE--------YYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A5E4F1E4 PREDICTED: GDSL1.9e-2066.67Show/hide
Query:  LVVVLVLSCLLWCCK--SNREEY-----------YSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        L V+LVLS    CC+  S+  EY            +M CDEIYVVHEGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPF
Subjt:  LVVVLVLSCLLWCCK--SNREEY-----------YSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A6J5VI93 LysM domain-containing protein1.9e-2066.67Show/hide
Query:  LVVVLVLSCLLWCCK--SNREEY-----------YSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        L V+LVLS    CC+  S+  EY            +M CDEIYVVHEGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPF
Subjt:  LVVVLVLSCLLWCCK--SNREEY-----------YSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A6J5Y0Z0 LysM domain-containing protein1.9e-2066.67Show/hide
Query:  LVVVLVLSCLLWCCK--SNREEY-----------YSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        L V+LVLS    CC+  S+  EY            +M CDEIYVVHEGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKITPF
Subjt:  LVVVLVLSCLLWCCK--SNREEY-----------YSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A6P5YVX7 uncharacterized protein LOC1112954622.9e-2155.56Show/hide
Query:  MGRKRSSSEVN----------LVVVLVLSCLLWCCKSNREEYY-----------SMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV
        MGR  S+SE+           + V+L+LSC   CC+ +  + Y           +  CDEIYVV EGETLQ+ISEKCGDPFIVEENPHI+DPDDVFPGLV
Subjt:  MGRKRSSSEVN----------LVVVLVLSCLLWCCKSNREEYY-----------SMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLV

Query:  IKITPFHH
        IKITPF++
Subjt:  IKITPFHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.9e-1779.17Show/hide
Query:  CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        CDEIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Subjt:  CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein5.0e-1864.06Show/hide
Query:  SCLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI
        +C +W  K   E      C+E+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Subjt:  SCLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein5.4e-2051.65Show/hide
Query:  GRKRSSSEVNLVVVLVLSCLLWCCKSNR------EEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH
        G    S+  + VV+L L  LL   ++N        ++ +  C+EIY+V EGETL +I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Subjt:  GRKRSSSEVNLVVVLVLSCLLWCCKSNR------EEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGAAGAGATCATCATCAGAGGTTAATTTGGTAGTGGTTTTGGTATTGAGTTGTTTATTATGGTGTTGCAAGAGCAATAGAGAAGAGTATTATTCTATGGATTG
TGATGAGATATATGTTGTTCATGAAGGAGAAACATTGCAAAGCATTAGTGAAAAGTGTGGAGATCCATTCATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATG
TTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCATCATATTACCAATGCCTTTCTCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGGAAGAGATCATCATCAGAGGTTAATTTGGTAGTGGTTTTGGTATTGAGTTGTTTATTATGGTGTTGCAAGAGCAATAGAGAAGAGTATTATTCTATGGATTG
TGATGAGATATATGTTGTTCATGAAGGAGAAACATTGCAAAGCATTAGTGAAAAGTGTGGAGATCCATTCATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATG
TTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCATCATATTACCAATGCCTTTCTCACTTAA
Protein sequenceShow/hide protein sequence
MGRKRSSSEVNLVVVLVLSCLLWCCKSNREEYYSMDCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHITNAFLT