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HG10017047 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017047
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionzinc finger protein 593
Genome locationChr03:10571206..10573108
RNA-Seq ExpressionHG10017047
SyntenyHG10017047
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR022755 - Zinc finger, double-stranded RNA binding
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063802.1 zinc finger protein 593 [Cucumis melo var. makuwa]1.8e-4093.18Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

XP_008462489.1 PREDICTED: zinc finger protein 593 [Cucumis melo]1.8e-4093.18Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

XP_022143723.1 zinc finger protein 593 [Momordica charantia]3.7e-4194.32Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVYDEL KPDVERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLDA+LAAGMGMPDNGPKLM+M
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

XP_022962632.1 zinc finger protein 593 [Cucurbita moschata]1.8e-4094.32Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDADLAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

XP_022972762.1 zinc finger protein 593 [Cucurbita maxima]1.8e-4094.32Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDADLAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

TrEMBL top hitse value%identityAlignment
A0A1S3CH13 zinc finger protein 5938.8e-4193.18Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

A0A5A7V6B3 Zinc finger protein 5938.8e-4193.18Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVY+EL KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

A0A6J1CRE9 zinc finger protein 5931.8e-4194.32Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVYDEL KPDVERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLDA+LAAGMGMPDNGPKLM+M
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

A0A6J1HD68 zinc finger protein 5938.8e-4194.32Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDADLAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

A0A6J1I5Q7 zinc finger protein 5938.8e-4194.32Show/hide
Query:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM
        MVYD L KP+VERP LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDADLAAGMGMPDNGPKLMAM
Subjt:  MVYDELTKPDVERP-LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM

SwissProt top hitse value%identityAlignment
B0BLT0 Zinc finger protein 5931.4e-1151.67Show/hide
Query:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG
        +D  LPG  Q+YCLHC RYF ++    EHFKTK H++R+K +    P+TQ +A+ AAGMG
Subjt:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG

Q08004 Bud site selection protein 203.5e-1041.25Show/hide
Query:  MVYDEL-TKPDVERPL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGM
        ++Y++L TK  V++ L  P+DE  PG+GQ+YC+HC +Y         H K K H++RVK + G  P+TQ  +D AAG  +
Subjt:  MVYDEL-TKPDVERPL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGM

Q9DB42 Zinc finger protein 5933.2e-0842.25Show/hide
Query:  LTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG
        L +P  E     D DLPG G + CL C RYF + +    HF++K H+KR+K ++   P++Q +A+ AAGMG
Subjt:  LTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG

Q9P370 Zinc finger protein bud202.7e-1038.96Show/hide
Query:  VYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMP
        ++++LT+ +    LP+D DLPG+GQ+YC+ C RYF +      H K K H++R+K +    P+TQ +A+ A  +G P
Subjt:  VYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMP

Q9U239 Zinc finger protein 593 homolog1.0e-0946.67Show/hide
Query:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG
        +D DLPG GQ+YC+ C+R+F +   R  H KTK H+ RVK +    P+TQ +A+ A G G
Subjt:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMG

Arabidopsis top hitse value%identityAlignment
AT2G36930.1 zinc finger (C2H2 type) family protein1.7e-3675.86Show/hide
Query:  MVYDELTKPDVE-RPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMA
        +VY EL KP+ E +PL +DEDLPGMGQ+YCLHCDRYF+NVSVRD+HFKTK+H+KRV +M G APH+QLDADLA GMGMPDNGPKLM+
Subjt:  MVYDELTKPDVE-RPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGC
GAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTG
GGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGC
GAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTG
GGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATGTGA
Protein sequenceShow/hide protein sequence
MVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAM