CuGenDBv2

Gene ID	HG10017109
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	Chr03:11094638..11096734
RNA-Seq Expression	HG10017109
Synteny	HG10017109
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

3.3e-185

90.36

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLKEAEQVLDVLFDDY DYQRPRR KT+ D 
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPL 
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
          +AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

1.8e-188

90.89

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVKT+   
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
        NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

1.4e-188

89.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPN+SSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QSSPST +D+TPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DY+RP+RVKTKDDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +N+SLCSTTVASQL+LSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVEST+K IEPMIEPPA  PTDANPL+
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQMVEEQL
        N++AIQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQMVEEQL

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

4.1e-180

87.01

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFE  PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QS+PST +DSTPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A E+RAKDA LRAFANKLK+AEQVLDVLFDDY DYQ  +RVKT DDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLC-STTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL
        +NESLC STTVASQL+LSD+LSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VEST+K IEPMIEPPA  PTDANPL
Subjt:  DNESLC-STTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL

Query:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
        + ++ IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGLH+P EPIQ+   QL
Subjt:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

4.2e-193

92.19

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPSTS+DSTPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVK KDD 
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQL+LSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVEST+K IEPMIEPPA  PTDANPLS
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
        NM++IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNA PGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

1.6e-185

90.36

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLKEAEQVLDVLFDDY DYQRPRR KT+ D 
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPL 
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
          +AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

8.9e-189

90.89

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVKT+   
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
        NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

8.9e-189

90.89

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
        TS+ QSSPST +DSTPS+SKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DYQRPRRVKT+   
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +NESLCSTTVASQLRLSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVEST+K IEPMIEPPA    DANPLS
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
        NM+AIQGLLPPNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

6.8e-189

89.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPN+SSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFE SPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QSSPST +D+TPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A EIRAKDA LRAFANKLK+AEQVLDVLFDDY DY+RP+RVKTKDDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS
        +N+SLCSTTVASQL+LSD+LSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVEST+K IEPMIEPPA  PTDANPL+
Subjt:  DNESLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLS

Query:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQMVEEQL
        N++AIQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQ+   QL
Subjt:  NMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQMVEEQL

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

8.4e-179

86.49

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFE  PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFL

Query:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV
         S+ QS+PST +DSTPSTSKEILSLFNVLQTQLFEAVAELQEIL+LQDSKQK+A E+RAKDA LRAFANKLK+AEQVLDVLFDDY DYQ  +RVKT DDV
Subjt:  TSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDV

Query:  DNESLCS-TTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL
        +NESLCS TTVASQL+LSD+LSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VEST+K IEPMIE PA  PTDANPL
Subjt:  DNESLCS-TTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPL

Query:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL
        + ++ IQGLLPPNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGLH+P EPIQ+   QL
Subjt:  SNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQL

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

2.6e-04

31.02

Show/hide

Query:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLD-VLFDDYVDYQRPRRVKTKDDVDNESL----
        S  +T   +L L N L    ++++  + +L++   +Q    ++  EI  KD  +   A  LK+ E  L+  L  D V+          D + NE L    
Subjt:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLD-VLFDDYVDYQRPRRVKTKDDVDNESL----

Query:  -------CSTTVASQLRLSDLLSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP
                   V  ++   DL+SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A +DV  P
Subjt:  -------CSTTVASQLRLSDLLSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

8.5e-128

62.56

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPN+              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL
        F+ SPNR++WL+AFRGSLP+FL+S     P    + +PS++KEILS FN LQTQLFEAV ELQEIL+LQD+KQKVA EI++KD++L AFANKLK+AE+VL
Subjt:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL

Query:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY DY++P+R K  +DD DN+   S  STTV+SQL+L D+L+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP
        VE+ +K +E +IEPP   P +A    ++SAI  LLPPNI VPSGWKPGMPVELPRD+P+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+P
Subjt:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP

Query:  PEPIQMVEEQLVVFLRRISSTY
        P+ IQ+   QL +     SS Y
Subjt:  PEPIQMVEEQLVVFLRRISSTY

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

6.0e-129

62.56

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPN+              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNI--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL
        F+ SPNR++WL+AFRGSLP+FL+S     P    + +PS++KEILS FN LQTQLFEAV ELQEIL+LQD+KQKVA EI++KD++L AFANKLK+AE+VL
Subjt:  FEASPNRSLWLTAFRGSLPTFLTSKIQSSPSTSIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVL

Query:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY DY++P+R K  +DD DN+   S  STTV+SQL+L D+L+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYVDYQRPRRVK-TKDDVDNE---SLCSTTVASQLRLSDLLSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP
        VE+ +K +E +IEPP   P +A    ++SAI  LLPPNI VPSGWKPGMPVELPRD+P+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+P
Subjt:  VESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKP

Query:  PEPIQMVEEQLVVFLRRISSTY
        P+ IQ+   QL +     SS Y
Subjt:  PEPIQMVEEQLVVFLRRISSTY

Sequences

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CDS sequence

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ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATC
CCACCACCAAAATCAACCCAATATCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCGCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCAT
TAGCTTCCAAGCTCTTTGAAGCTTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTAAAATCCAGTCCTCACCCTCTACC
TCGATTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAACTTCAGGAGATTCTTAATCTTCA
AGACTCTAAGCAGAAGGTTGCTAATGAGATACGTGCTAAAGATGCTAATCTTCGTGCTTTTGCTAATAAGCTCAAGGAAGCTGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGTGGATTATCAACGTCCTCGTCGGGTTAAAACGAAGGATGATGTTGACAATGAGTCTTTGTGTTCGACTACAGTTGCATCCCAGTTGAGATTATCTGATCTATTG
TCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCG
TGCGTCTCAGTTGTATAATTTTGCAAACCTGGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGACAAAGCTATTGAGCCAATGATTGAGCCTCCAGCTCAGGCGCCAA
CAGATGCTAATCCTCTTTCTAATATGTCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGAT
ATACCAATGCCCCCTCCTGGATGGAAGCCTGGAGACCCCGTGCCATTACCCCCAATGGATTCACTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCT
TCCAGGATTGCACAAACCTCCTGAGCCAATTCAAATGGTTGAAGAACAGCTTGTGGTCTTTCTAAGACGCATTTCGAGTACATATATGTGTAGGCATGATTATTAA

mRNA sequence

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Protein sequence

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MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEASPNRSLWLTAFRGSLPTFLTSKIQSSPST
SIDSTPSTSKEILSLFNVLQTQLFEAVAELQEILNLQDSKQKVANEIRAKDANLRAFANKLKEAEQVLDVLFDDYVDYQRPRRVKTKDDVDNESLCSTTVASQLRLSDLL
SYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTDKAIEPMIEPPAQAPTDANPLSNMSAIQGLLPPNITVPSGWKPGMPVELPRD
IPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQMVEEQLVVFLRRISSTYMCRHDY

HG10017109 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome