CuGenDBv2

Gene ID	HG10017188
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	Chr03:11786403..11786615
RNA-Seq Expression	HG10017188
Synteny	HG10017188
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR042102 - RNA polymerase Rpb1, domain 3 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

APW82621.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]

1.4e-27

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

YP_004841773.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo]

1.4e-27

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

YP_009420784.1 RNA polymerase beta'' subunit [Citrullus colocynthis]

1.4e-27

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

YP_009431547.1 RNA polymerase beta'' subunit [Citrullus amarus]

1.4e-27

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

YP_009431632.1 RNA polymerase beta'' subunit [Citrullus rehmii]

1.4e-27

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LFL6 DNA-directed RNA polymerase

6.9e-28

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

A0A1X9Q1J9 DNA-directed RNA polymerase subunit beta''

6.9e-28

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

A0A249RXP5 DNA-directed RNA polymerase subunit beta''

6.9e-28

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

A0A249RZW9 DNA-directed RNA polymerase subunit beta''

6.9e-28

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

A0A286NFX2 DNA-directed RNA polymerase subunit beta''

6.9e-28

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

SwissProt top hits

e value

%identity

Alignment

A8SE78 DNA-directed RNA polymerase subunit beta''

2.7e-29

92.86

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNK IDGTA+K+LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

Q06H07 DNA-directed RNA polymerase subunit beta''

1.6e-29

92.86

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTA+K+LISRLIDHFGMAYTSHILDQ+KT+GFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

Q09G56 DNA-directed RNA polymerase subunit beta''

2.7e-29

92.86

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNK IDGTA+K+LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

Q4VZP3 DNA-directed RNA polymerase subunit beta''

1.9e-30

97.14

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERADLVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

Q9THV5 DNA-directed RNA polymerase subunit beta''

1.6e-29

94.29

Show/hide

Query:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MEVLMAERA+LVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIP
Subjt:  MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.0e-28

93.94

Show/hide

Query:  MAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP
        MAERA+LVFHNKVIDGTAIK+LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIP
Subjt:  MAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACAACTTATTAGCAGATTAATAGATCACTTCGGAATGGC
ATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEVLMAERADLVFHNKVIDGTAIKQLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIP

HG10017188 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome