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HG10017204 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017204
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:11913921..11919124
RNA-Seq ExpressionHG10017204
SyntenyHG10017204
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016791 - phosphatase activity (molecular function)
GO:0140096 - catalytic activity, acting on a protein (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX92970.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]2.1e-0735.14Show/hide
Query:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI
        +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++  +   ++ C     AEL A  EGI +A++  + P     
Subjt:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI

Query:  LESDSLQAVNL
        +E+DSL+AVNL
Subjt:  LESDSLQAVNL

EEC68026.1 hypothetical protein OsI_35837 [Oryza sativa Indica Group]8.0e-0734.23Show/hide
Query:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI
        +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++  +   ++ C     AEL A  EGI +A++  + P     
Subjt:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI

Query:  LESDSLQAVNL
        +E+D L+AVNL
Subjt:  LESDSLQAVNL

XP_019191714.1 PREDICTED: uncharacterized protein LOC109186242 [Ipomoea nil]1.4e-0641.86Show/hide
Query:  WSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVN
        WS+P  G+HK+NVD   D ++   GFG  IRD  G+ VA    + D       AE  AI E +    E+N N K  +E+DSLQ VN
Subjt:  WSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVN

XP_023876543.1 uncharacterized protein LOC111988969 [Quercus suber]1.0e-0638.95Show/hide
Query:  SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLVWKK
        SP+ W  P  G+HKINVD  S  + N++  GV IRD+ G +VA  +  +  C    L E+ A+  G  LA E+  + K I E DSL  +  V  K
Subjt:  SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLVWKK

XP_038874893.1 uncharacterized protein LOC120067397 [Benincasa hispida]3.1e-0654.55Show/hide
Query:  PVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEI
        P   W K NVD       N TG GV+IRD+SGSLVA  AS ++   P+ LAE+RAILEGIK+A  I
Subjt:  PVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEI

TrEMBL top hitse value%identityAlignment
A0A6A6LAJ6 Uncharacterized protein5.6e-0633.7Show/hide
Query:  SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLV
        +P  W +P   W K+NVD+ +++ S  TG G+ +R+  GS VA   SR+       +AE+  + E +   ++ N     I+ESD+LQ VN++
Subjt:  SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLV

A0A6A6M582 Uncharacterized protein5.6e-0633.7Show/hide
Query:  SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLV
        +P  W +P   W K+NVD+ +++ S  TG G+ +R+  GS VA   SR+       +AE+  + E +   ++ N     I+ESD+LQ VN++
Subjt:  SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLV

B8BK40 Uncharacterized protein3.9e-0734.23Show/hide
Query:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI
        +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++  +   ++ C     AEL A  EGI +A++  + P     
Subjt:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI

Query:  LESDSLQAVNL
        +E+D L+AVNL
Subjt:  LESDSLQAVNL

Q2R6V8 Retrotransposon protein, putative, unclassified1.0e-0735.14Show/hide
Query:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI
        +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++  +   ++ C     AEL A  EGI +A++  + P     
Subjt:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI

Query:  LESDSLQAVNL
        +E+DSL+AVNL
Subjt:  LESDSLQAVNL

Q53MP1 Retrotransposon protein, putative, unclassified1.0e-0735.14Show/hide
Query:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI
        +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++  +   ++ C     AEL A  EGI +A++  + P     
Subjt:  LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFI

Query:  LESDSLQAVNL
        +E+DSL+AVNL
Subjt:  LESDSLQAVNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTGAAGATCTTCTGGAAGCGTGGAAAACTTTCGATTTGACGACGGAGGAAGATAATTCCCTTGTTGGATTAATCCCAGAAATTGTTGGTGATATAAGTGGTGA
ACTCGATCTCTGTGTGATTGGTAAGGCTAAGTCTGCCTTCCCTTTGGCTTCATCATTTTCTTCCCCTTATCATCATGATGGGGTGGATAAAGAATCCTTATTCCCTTGTG
GTAGCTCTGACCAATGGATTAAGAAAGGTCCTATGGTTAATTCCAGATGCCCGTCAGCAGAAAGTGAGGGTACGAGTTCTTTTGTCCAACCTGTTAAAAGATGGAAAAGG
AAAGAAAGATTGAATGTTGCTGAAACTCCTATGAAGGATCTGGTGAAGTTAAATAAACGAAAGGATCCAGGTATCACATCTAATAATGCTTCACAAAGGAGCAAGGGTAT
TCCTGATATTAACCTTGAGTATAAGAAGTTAGTTCATGTTGAAAAGCCTTTATTGTGTTCTAAGAACTCTCCTTCAGTTTGGTCTCGTCCAGTTCTAGGCTGGCACAAGA
TAAACGTGGATGTTGTGTCGGATTTGGTTTCAAATACGACTGGGTTTGGTGTGGCTATCCGTGATGCTTCTGGTAGTTTAGTAGCTTTGTCTGCTTCAAGGGTGGATTGG
TGTTTGCCTGATCCTCTCGCTGAATTGAGGGCAATTCTTGAAGGAATAAAATTGGCTGTGGAAATTAATCCTAATGGTAAATTTATTCTTGAATCAGATTCTCTCCAGGC
GGTCAATCTGGTGTGGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTGAAGATCTTCTGGAAGCGTGGAAAACTTTCGATTTGACGACGGAGGAAGATAATTCCCTTGTTGGATTAATCCCAGAAATTGTTGGTGATATAAGTGGTGA
ACTCGATCTCTGTGTGATTGGTAAGGCTAAGTCTGCCTTCCCTTTGGCTTCATCATTTTCTTCCCCTTATCATCATGATGGGGTGGATAAAGAATCCTTATTCCCTTGTG
GTAGCTCTGACCAATGGATTAAGAAAGGTCCTATGGTTAATTCCAGATGCCCGTCAGCAGAAAGTGAGGGTACGAGTTCTTTTGTCCAACCTGTTAAAAGATGGAAAAGG
AAAGAAAGATTGAATGTTGCTGAAACTCCTATGAAGGATCTGGTGAAGTTAAATAAACGAAAGGATCCAGGTATCACATCTAATAATGCTTCACAAAGGAGCAAGGGTAT
TCCTGATATTAACCTTGAGTATAAGAAGTTAGTTCATGTTGAAAAGCCTTTATTGTGTTCTAAGAACTCTCCTTCAGTTTGGTCTCGTCCAGTTCTAGGCTGGCACAAGA
TAAACGTGGATGTTGTGTCGGATTTGGTTTCAAATACGACTGGGTTTGGTGTGGCTATCCGTGATGCTTCTGGTAGTTTAGTAGCTTTGTCTGCTTCAAGGGTGGATTGG
TGTTTGCCTGATCCTCTCGCTGAATTGAGGGCAATTCTTGAAGGAATAAAATTGGCTGTGGAAATTAATCCTAATGGTAAATTTATTCTTGAATCAGATTCTCTCCAGGC
GGTCAATCTGGTGTGGAAGAAATGA
Protein sequenceShow/hide protein sequence
METEDLLEAWKTFDLTTEEDNSLVGLIPEIVGDISGELDLCVIGKAKSAFPLASSFSSPYHHDGVDKESLFPCGSSDQWIKKGPMVNSRCPSAESEGTSSFVQPVKRWKR
KERLNVAETPMKDLVKLNKRKDPGITSNNASQRSKGIPDINLEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDW
CLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLVWKK