; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10017250 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017250
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationChr03:12286099..12289299
RNA-Seq ExpressionHG10017250
SyntenyHG10017250
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582147.1 Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]8.5e-6994.96Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ
        E GWNMDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAI SRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ

Query:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        LMLRIA+LVPRHPGR KKQEPASSSTAGPSKGKGGRKKK
Subjt:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]2.2e-6982.02Show/hide
Query:  PSHLSSLSDCDTESHSQTTLPQSLSYSHGLSYSSVC-EEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFA
        PS  SS S     S    ++   +S S  ++ S+V   EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCC HLKLPFA
Subjt:  PSHLSSLSDCDTESHSQTTLPQSLSYSHGLSYSSVC-EEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFA

Query:  IEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPRHPGRTKKQEPA-SSSTAGPSKGKGGRKKK
        IEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAITSRKQLMLRIA+LVPRHPGRTKKQEPA SSSTAGPSKGKGGRKKK
Subjt:  IEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPRHPGRTKKQEPA-SSSTAGPSKGKGGRKKK

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]1.4e-6697.01Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]1.8e-6696.27Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]2.7e-6797.76Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein3.1e-6996.4Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ
        EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQ

Query:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        LMLRIA+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  LMLRIADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein8.6e-6796.27Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein7.2e-6695.56Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAITSRKQ+MLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSK-GKGGRKKK
        A+LVPRHPGRTKKQEPASSSTAGPSK GKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSK-GKGGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein4.2e-6695.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGR KKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein3.2e-6696.27Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDG LSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK
        A+LVPRHPGR KKQEPASSSTAGPSKGKGGRKKK
Subjt:  ADLVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein2.8e-2248.85Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG L      SRK +ML  A+++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP

Query:  RHPGRTKKQEPASSST---AGPSKGKGGRKK
        +   RT+K   A  S     G  KGKG +KK
Subjt:  RHPGRTKKQEPASSST---AGPSKGKGGRKK

P49964 Signal recognition particle 19 kDa protein5.4e-5073.44Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPR
        +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTCVEI DCCSHLK+P AIE+DKAYPRDF Q GRVRV LKK+DG   NPAI ++KQLM++IA+LVP+
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPR

Query:  HPGRTKKQEPASSSTAGPSKGKGGRKKK
        H GRTKKQEPA+SSTAG SKGKGG+KKK
Subjt:  HPGRTKKQEPASSSTAGPSKGKGGRKKK

Q5RBR1 Signal recognition particle 19 kDa protein2.8e-2248.85Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG L      SRK +ML  A+++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP

Query:  RHPGRTKKQEPASSST---AGPSKGKGGRKK
        +   RT+K   A  S     G  KGKG +KK
Subjt:  RHPGRTKKQEPASSST---AGPSKGKGGRKK

Q943Z6 Signal recognition particle 19 kDa protein7.7e-4968.28Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDG L NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK
        A+LVPRHP R KKQE          A++ST+G S   GKGG+KK+
Subjt:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK

Q9D7A6 Signal recognition particle 19 kDa protein1.2e-2248.09Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG L      SRK +ML +A+++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVP

Query:  RHPGRTKKQ---EPASSSTAGPSKGKGGRKK
        +   RT+K    +P      G  KGKG +KK
Subjt:  RHPGRTKKQ---EPASSSTAGPSKGKGGRKK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative5.5e-5068.28Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDG L NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRI

Query:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK
        A+LVPRHP R KKQE          A++ST+G S   GKGG+KK+
Subjt:  ADLVPRHPGRTKKQE---------PASSSTAGPS--KGKGGRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATCGGTTCAGTTGTTGTTTTGTTGGTCGGTTCAACTCGAACCTAACCAAATTTGTAACTTACGGGTTCTCGGTTCCGCTCCACCTCCATCTCAGATTCCAAGT
CTTCCGTCTCCGTCGTCTGACTCGTCTCTCTGTCTCAGTCTCAGTCTCTCTCGTCTCTCCGTCTCACCTCTCGTCGCTCTCAGACTGTGACACTGAAAGTCACAGCCAAA
CCACATTACCACAGTCTCTCTCTTACAGTCACGGTCTCAGCTATTCTTCAGTGTGTGAGGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTA
GTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGCAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGTTG
CAGTCATCTCAAACTGCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGCGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAATGCTGT
CTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGATCTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCA
GGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAATCGGTTCAGTTGTTGTTTTGTTGGTCGGTTCAACTCGAACCTAACCAAATTTGTAACTTACGGGTTCTCGGTTCCGCTCCACCTCCATCTCAGATTCCAAGT
CTTCCGTCTCCGTCGTCTGACTCGTCTCTCTGTCTCAGTCTCAGTCTCTCTCGTCTCTCCGTCTCACCTCTCGTCGCTCTCAGACTGTGACACTGAAAGTCACAGCCAAA
CCACATTACCACAGTCTCTCTCTTACAGTCACGGTCTCAGCTATTCTTCAGTGTGTGAGGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTA
GTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGCAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGTTG
CAGTCATCTCAAACTGCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGCGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAATGCTGT
CTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGATCTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCA
GGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG
Protein sequenceShow/hide protein sequence
MKNRFSCCFVGRFNSNLTKFVTYGFSVPLHLHLRFQVFRLRRLTRLSVSVSVSLVSPSHLSSLSDCDTESHSQTTLPQSLSYSHGLSYSSVCEEFGWNMDGEIPNIKRWV
VLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGMLSNPAITSRKQLMLRIADLVPRHPGRTKKQEPASSSTA
GPSKGKGGRKKK